Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001136098 18 1482 NP_000360 18 1482 NP_001018046 18 1482 XP_005268096 18 1482 XP_006720308 18 1482 XP_005268094 18 1482 NP_003242 17 2528 NP_036277 17 3301 NP_001158503 17 3301 NP_085046 17 4312 NP_001001851 17 4312 NP_055423 16 5631 NP_001274739 16 5631 NP_001028200 16 5631 XP_005272600 16 5631 NP_001005197 16 5631 NP_056224 16 7355 NP_001191236 16 7355 NP_001191235 16 7355 NP_000574 16 7355 NP_001138624 16 7355 NP_689628 16 7355 NP_001186306 16 7355 NP_055977 16 7355 XP_005273458 16 7355 XP_005273457 16 7355 XP_006714240 16 7355 NP_057700 15 9605 NP_060218 15 9605 NP_004722 15 9605 NP_001257552 15 9605 NP_660333 15 9605 NP_001257551 15 9605 NP_003694 15 9605 NP_982278 15 9605 XP_006722363 15 9605 XP_006719756 15 9605 XP_005269288 15 9605 XP_006713992 15 9605 NP_001020471 15 9605>NP_001136098 Length = 274 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTVIDK AF Sbjct: 213 LTVIDKDAF 221>NP_000360 Length = 764 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTVIDK AF Sbjct: 213 LTVIDKDAF 221>NP_001018046 Length = 253 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTVIDK AF Sbjct: 213 LTVIDKDAF 221>XP_005268096 Length = 253 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTVIDK AF Sbjct: 213 LTVIDKDAF 221>XP_006720308 Length = 274 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTVIDK AF Sbjct: 213 LTVIDKDAF 221>XP_005268094 Length = 764 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTVIDK AF Sbjct: 213 LTVIDKDAF 221>NP_003242 Length = 146 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LTVIDKYA 8 LTV+D+YA Sbjct: 14 LTVMDRYA 21>NP_036277 Length = 212 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VIDKYAF 9 V+D+YAF Sbjct: 94 VVDRYAF 100>NP_001158503 Length = 188 Score = 16.9 bits (32), Expect = 3301 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VIDKYAF 9 V+D+YAF Sbjct: 94 VVDRYAF 100>NP_085046 Length = 942 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TVIDKYAF 9 T+I +YAF Sbjct: 59 TIISRYAF 66>NP_001001851 Length = 702 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TVIDKYAF 9 T+I +YAF Sbjct: 59 TIISRYAF 66>NP_055423 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LTVIDKY 7 +T++DKY Sbjct: 1219 ITILDKY 1225>NP_001274739 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LTVIDKY 7 +T++DKY Sbjct: 1219 ITILDKY 1225>NP_001028200 Length = 822 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LTVIDKY 7 +T++DKY Sbjct: 788 ITILDKY 794>XP_005272600 Length = 1253 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 1 LTVIDKY 7 +T++DKY Sbjct: 1219 ITILDKY 1225>NP_001005197 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LTVIDKYAF 9 LT+I YAF Sbjct: 212 LTIIISYAF 220>NP_056224 Length = 3123 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LTVIDKYA 8 LT I+KYA Sbjct: 2123 LTPIEKYA 2130>NP_001191236 Length = 493 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VIDKYAF 9 V+DKY F Sbjct: 361 VMDKYTF 367>NP_001191235 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VIDKYAF 9 V+DKY F Sbjct: 342 VMDKYTF 348>NP_000574 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VIDKYAF 9 V+DKY F Sbjct: 342 VMDKYTF 348>NP_001138624 Length = 372 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TVIDKY 7 TV+DKY Sbjct: 271 TVLDKY 276>NP_689628 Length = 397 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TVIDKY 7 TV+DKY Sbjct: 296 TVLDKY 301>NP_001186306 Length = 720 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LTVIDKY 7 LTV++KY Sbjct: 701 LTVLEKY 707>NP_055977 Length = 724 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LTVIDKY 7 LTV++KY Sbjct: 705 LTVLEKY 711>XP_005273458 Length = 307 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TVIDKY 7 TV+DKY Sbjct: 206 TVLDKY 211>XP_005273457 Length = 307 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 TVIDKY 7 TV+DKY Sbjct: 206 TVLDKY 211>XP_006714240 Length = 425 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 VIDKYAF 9 V+DKY F Sbjct: 342 VMDKYTF 348>NP_057700 Length = 588 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LTVIDKY 7 LTVID Y Sbjct: 29 LTVIDVY 35>NP_060218 Length = 425 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 IDKYAF 9 IDKY F Sbjct: 92 IDKYVF 97>NP_004722 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LTVIDKYAF 9 LT+I KY + Sbjct: 132 LTIIGKYFY 140>NP_001257552 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LTVIDKYAF 9 LT+I KY + Sbjct: 132 LTIIGKYFY 140>NP_660333 Length = 1321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LTVIDKYAF 9 LTV+ +YA+ Sbjct: 1184 LTVLREYAY 1192>NP_001257551 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LTVIDKYAF 9 LT+I KY + Sbjct: 132 LTIIGKYFY 140>NP_003694 Length = 857 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LTVIDK 6 LTVIDK Sbjct: 492 LTVIDK 497>NP_982278 Length = 295 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 IDKYAF 9 +DKY+F Sbjct: 205 VDKYSF 210>XP_006722363 Length = 212 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LTVIDKYA 8 + +IDKYA Sbjct: 105 MKMIDKYA 112>XP_006719756 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LTVIDKYAF 9 LT+I KY + Sbjct: 132 LTIIGKYFY 140>XP_005269288 Length = 478 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LTVIDKYAF 9 LT+I KY + Sbjct: 132 LTIIGKYFY 140>XP_006713992 Length = 857 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LTVIDK 6 LTVIDK Sbjct: 492 LTVIDK 497>NP_001020471 Length = 244 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LTVIDKYA 8 + +IDKYA Sbjct: 137 MKMIDKYA 144Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.149 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 471,138 Number of extensions: 757 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |