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Blast-Search of mutated query peptide against human proteome

BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_001166953                                                           16    5631
NP_057386                                                              16    5631
XP_005265259                                                           16    5631
NP_054831                                                              15    9605
NP_001028732                                                           15    9605
NP_001269832                                                           15    9605
NP_001269831                                                           15    9605
NP_570722                                                              15    9605
NP_001028731                                                           15    9605
XP_005251106                                                           15    9605
XP_006716688                                                           15    9605
XP_006716687                                                           15    9605

>NP_001166953
          Length = 441

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   LTTKTAIFS 9
           +TTK  IFS
Sbjct: 330 ITTKNEIFS 338



>NP_057386
          Length = 442

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   LTTKTAIFS 9
           +TTK  IFS
Sbjct: 331 ITTKNEIFS 339



>XP_005265259
          Length = 379

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   LTTKTAIFS 9
           +TTK  IFS
Sbjct: 268 ITTKNEIFS 276



>NP_054831
          Length = 1294

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   LTTKTAIF 8
           LTTKT+++
Sbjct: 913 LTTKTSLW 920



>NP_001028732
          Length = 381

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3  TKTAIF 8
          TKTA+F
Sbjct: 13 TKTAVF 18



>NP_001269832
          Length = 1287

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   LTTKTAIF 8
           LTTKT+++
Sbjct: 906 LTTKTSLW 913



>NP_001269831
          Length = 1285

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   LTTKTAIF 8
           LTTKT+++
Sbjct: 904 LTTKTSLW 911



>NP_570722
          Length = 420

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3  TKTAIF 8
          TKTA+F
Sbjct: 13 TKTAVF 18



>NP_001028731
          Length = 376

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/6 (83%), Positives = 6/6 (100%)

Query: 3  TKTAIF 8
          TKTA+F
Sbjct: 13 TKTAVF 18



>XP_005251106
          Length = 1281

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   LTTKTAIF 8
           LTTKT+++
Sbjct: 900 LTTKTSLW 907



>XP_006716688
          Length = 1294

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   LTTKTAIF 8
           LTTKT+++
Sbjct: 913 LTTKTSLW 920



>XP_006716687
          Length = 1294

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   LTTKTAIF 8
           LTTKT+++
Sbjct: 913 LTTKTSLW 920



  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.321    0.123    0.304 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 278,316
Number of extensions: 301
Number of successful extensions: 12
Number of sequences better than 10000.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.0 bits)
S2: 28 (15.4 bits)