Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1482 NP_001263689 18 1482 NP_001119584 18 1482 NP_001119586 18 1482 NP_001263625 18 1482 NP_001119590 18 1482 NP_001263690 18 1482 NP_001119585 18 1482 NP_001263624 18 1482 NP_001119588 18 1482 NP_001119587 18 1482 NP_001119589 18 1482 NP_001263627 18 1482 NP_001263628 18 1482 NP_001263626 18 1482 NP_001239553 16 7355 NP_005206 16 7355 NP_001106272 16 7355 NP_001106271 16 7355 NP_066920 16 7355 XP_005258261 16 7355 XP_006712148 16 7355 XP_006712147 16 7355 XP_006712146 16 7355 XP_006712145 16 7355 XP_006712144 16 7355 XP_006712143 16 7355 XP_005264569 16 7355 NP_004658 15 9605 NP_001158159 15 9605 NP_001158157 15 9605 XP_006725081 15 9605 XP_006725080 15 9605 XP_006720790 15 9605 XP_005268334 15 9605 XP_005268333 15 9605 XP_006720789 15 9605 XP_006715539 15 9605 XP_005267031 15 9605 NP_001010923 15 9605>NP_000537 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 252 LTIITLEDS 260>NP_001263689 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 213 LTIITLEDS 221>NP_001119584 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 252 LTIITLEDS 260>NP_001119586 Length = 341 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 252 LTIITLEDS 260>NP_001263625 Length = 302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 213 LTIITLEDS 221>NP_001119590 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 213 LTIITLEDS 221>NP_001263690 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 213 LTIITLEDS 221>NP_001119585 Length = 346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 252 LTIITLEDS 260>NP_001263624 Length = 307 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 213 LTIITLEDS 221>NP_001119588 Length = 209 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 120 LTIITLEDS 128>NP_001119587 Length = 261 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 120 LTIITLEDS 128>NP_001119589 Length = 214 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 120 LTIITLEDS 128>NP_001263627 Length = 182 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 93 LTIITLEDS 101>NP_001263628 Length = 187 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 93 LTIITLEDS 101>NP_001263626 Length = 234 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LTIITLADS 9 LTIITL DS Sbjct: 93 LTIITLEDS 101>NP_001239553 Length = 965 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 666 TVITIAD 672>NP_005206 Length = 1447 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 +T++TL+D Sbjct: 613 ITVVTLSD 620>NP_001106272 Length = 960 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 661 TVITIAD 667>NP_001106271 Length = 968 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 669 TVITIAD 675>NP_066920 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 674 TVITIAD 680>XP_005258261 Length = 1447 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 +T++TL+D Sbjct: 613 ITVVTLSD 620>XP_006712148 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 674 TVITIAD 680>XP_006712147 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 674 TVITIAD 680>XP_006712146 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 674 TVITIAD 680>XP_006712145 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 674 TVITIAD 680>XP_006712144 Length = 973 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 674 TVITIAD 680>XP_006712143 Length = 996 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 697 TVITIAD 703>XP_005264569 Length = 1003 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 TIITLAD 8 T+IT+AD Sbjct: 704 TVITIAD 710>NP_004658 Length = 4834 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIITLADS 9 T++TLA S Sbjct: 868 TVVTLASS 875>NP_001158159 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 533 LTLLTLAE 540>NP_001158157 Length = 680 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 568 LTLLTLAE 575>XP_006725081 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 471 LTLLTLAE 478>XP_006725080 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 533 LTLLTLAE 540>XP_006720790 Length = 4748 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIITLADS 9 T++TLA S Sbjct: 782 TVVTLASS 789>XP_005268334 Length = 4796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIITLADS 9 T++TLA S Sbjct: 830 TVVTLASS 837>XP_005268333 Length = 4796 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIITLADS 9 T++TLA S Sbjct: 830 TVVTLASS 837>XP_006720789 Length = 4829 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TIITLADS 9 T++TLA S Sbjct: 868 TVVTLASS 875>XP_006715539 Length = 544 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 471 LTLLTLAE 478>XP_005267031 Length = 606 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 533 LTLLTLAE 540>NP_001010923 Length = 641 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LTIITLAD 8 LT++TLA+ Sbjct: 568 LTLLTLAE 575Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.135 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 341,144 Number of extensions: 501 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |