Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000360 20 509 XP_005268094 20 509 NP_002261 17 3301 NP_694858 17 3301 NP_001129668 17 3301 NP_001129667 17 3301 NP_038461 17 3301 XP_005248557 17 3301 XP_005248558 17 3301 NP_071435 17 4312 XP_005246819 17 4312 XP_005246818 17 4312 XP_005246815 17 4312 NP_066918 16 5631 NP_001158051 16 5631 XP_006726675 16 5631 XP_006712194 16 5631 XP_006712193 16 5631 XP_006712192 16 5631 XP_006712191 16 5631 NP_073732 16 7355 NP_001243328 16 7355 NP_061897 16 7355 NP_114141 16 7355 NP_057323 16 7355 XP_006726569 16 7355 XP_005256732 16 7355 XP_006717414 16 7355 XP_005264436 16 7355 XP_006712098 16 7355 XP_006712097 16 7355 XP_006710281 16 7355 NP_001036014 16 7355 NP_001243330 16 7355 NP_065103 15 9605 NP_000320 15 9605 NP_000677 15 9605 NP_076985 15 9605 NP_056288 15 9605 NP_444504 15 9605 NP_001157932 15 9605 XP_006710874 15 9605 XP_006710372 15 9605 XP_005270458 15 9605 XP_005270457 15 9605 NP_071387 15 9605>NP_000360 Length = 764 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSYIVFVLT 9 L+YIVFVLT Sbjct: 580 LAYIVFVLT 588>XP_005268094 Length = 764 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LSYIVFVLT 9 L+YIVFVLT Sbjct: 580 LAYIVFVLT 588>NP_002261 Length = 898 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 56 NYLIFVLT 63>NP_694858 Length = 890 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 48 NYLIFVLT 55>NP_001129668 Length = 897 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 46 NYLIFVLT 53>NP_001129667 Length = 887 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 46 NYLIFVLT 53>NP_038461 Length = 887 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 46 NYLIFVLT 53>XP_005248557 Length = 890 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 48 NYLIFVLT 55>XP_005248558 Length = 866 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 +Y++FVLT Sbjct: 56 NYLIFVLT 63>NP_071435 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 +SY VFV+T Sbjct: 139 VSYAVFVVT 147>XP_005246819 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 +SY VFV+T Sbjct: 139 VSYAVFVVT 147>XP_005246818 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 +SY VFV+T Sbjct: 139 VSYAVFVVT 147>XP_005246815 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 +SY VFV+T Sbjct: 139 VSYAVFVVT 147>NP_066918 Length = 635 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 + Y+VFVL Sbjct: 27 MDYVVFVL 34>NP_001158051 Length = 167 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 SY++FVL+ Sbjct: 142 SYVLFVLS 149>XP_006726675 Length = 167 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SYIVFVLT 9 SY++FVL+ Sbjct: 142 SYVLFVLS 149>XP_006712194 Length = 362 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 + Y+VFVL Sbjct: 27 MDYVVFVL 34>XP_006712193 Length = 635 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 + Y+VFVL Sbjct: 27 MDYVVFVL 34>XP_006712192 Length = 635 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 + Y+VFVL Sbjct: 27 MDYVVFVL 34>XP_006712191 Length = 635 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 + Y+VFVL Sbjct: 27 MDYVVFVL 34>NP_073732 Length = 279 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 L+Y+ FVL+ Sbjct: 36 LTYVYFVLS 44>NP_001243328 Length = 279 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 L+Y+ FVL+ Sbjct: 36 LTYVYFVLS 44>NP_061897 Length = 2071 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +Y+VFV T Sbjct: 310 AYVVFVTT 317>NP_114141 Length = 5635 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 S +VFVLT Sbjct: 165 SQVVFVLT 172>NP_057323 Length = 3530 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 YIVFVLT 9 Y++FV+T Sbjct: 3254 YVIFVVT 3260>XP_006726569 Length = 789 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 S +VFVLT Sbjct: 160 SQVVFVLT 167>XP_005256732 Length = 3531 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 YIVFVLT 9 Y++FV+T Sbjct: 3255 YVIFVVT 3261>XP_006717414 Length = 5100 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 S +VFVLT Sbjct: 162 SQVVFVLT 169>XP_005264436 Length = 1881 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +Y+VFV T Sbjct: 310 AYVVFVTT 317>XP_006712098 Length = 2059 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +Y+VFV T Sbjct: 298 AYVVFVTT 305>XP_006712097 Length = 2070 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +Y+VFV T Sbjct: 310 AYVVFVTT 317>XP_006710281 Length = 1303 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 S +VFVLT Sbjct: 133 SQVVFVLT 140>NP_001036014 Length = 213 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LSYIVFV 7 LSY+VF+ Sbjct: 186 LSYMVFI 192>NP_001243330 Length = 252 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LSYIVFVLT 9 L+Y+ FVL+ Sbjct: 36 LTYVYFVLS 44>NP_065103 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 LSYI F+L Sbjct: 330 LSYIPFLL 337>NP_000320 Length = 533 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +YIVFV T Sbjct: 248 NYIVFVET 255>NP_000677 Length = 363 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LSYIVFVL 8 L YI+FV+ Sbjct: 50 LYYIIFVI 57>NP_076985 Length = 1104 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LSYIVFVL 8 L YI+F L Sbjct: 834 LDYIIFTL 841>NP_056288 Length = 2046 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +Y+VFV T Sbjct: 312 AYVVFVST 319>NP_444504 Length = 594 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LSYIVFV 7 L+Y+VFV Sbjct: 289 LAYLVFV 295>NP_001157932 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 SYI F+L+ Sbjct: 301 SYIYFILS 308>XP_006710874 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SYIVFVLT 9 +YIVFV T Sbjct: 292 NYIVFVET 299>XP_006710372 Length = 427 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LSYIVFV 7 L+Y+VFV Sbjct: 122 LAYLVFV 128>XP_005270458 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LSYIVFV 7 L+Y+VFV Sbjct: 247 LAYLVFV 253>XP_005270457 Length = 580 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LSYIVFV 7 L+Y+VFV Sbjct: 289 LAYLVFV 295>NP_071387 Length = 704 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LSYIVFV 7 LS+IVF+ Sbjct: 579 LSFIVFI 585Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.156 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 396,268 Number of extensions: 663 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |