Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1135 XP_006718908 18 1135 XP_005271621 18 1135 XP_006718907 18 1135 XP_006718906 18 1135 XP_005271619 18 1135 XP_005271618 18 1135 NP_954590 17 4312 NP_059993 17 4312 NP_001116151 17 4312 XP_005256764 17 4312 XP_005256763 17 4312 XP_005266009 17 4312 XP_006714961 17 4312 XP_006714960 17 4312 XP_005266007 17 4312 NP_001139669 17 4312 NP_001092286 16 5631 NP_001077422 16 5631 NP_001258573 16 5631 NP_001258572 16 5631 NP_071348 16 5631 XP_006718561 16 5631 XP_006712131 16 5631 XP_006712128 16 5631 XP_006712127 16 5631 XP_006712126 16 5631 XP_006712125 16 5631 XP_006712124 16 5631 NP_031399 16 7355 NP_001255968 16 7355 NP_001121902 16 7355 NP_001121901 16 7355 NP_064544 16 7355 NP_001241878 16 7355 XP_006714339 16 7355 XP_006714338 16 7355 NP_001188 15 9605>NP_000042 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 1652 LQLSKMAIN 1660>XP_006718908 Length = 1708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 304 LQLSKMAIN 312>XP_005271621 Length = 2708 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 1304 LQLSKMAIN 1312>XP_006718907 Length = 3050 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 1646 LQLSKMAIN 1654>XP_006718906 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 1652 LQLSKMAIN 1660>XP_005271619 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 1652 LQLSKMAIN 1660>XP_005271618 Length = 3056 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LQLSKMAIH 9 LQLSKMAI+ Sbjct: 1652 LQLSKMAIN 1660>NP_954590 Length = 282 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 +QLSK+ +H Sbjct: 74 MQLSKLELH 82>NP_059993 Length = 301 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 +QLSK+ +H Sbjct: 93 MQLSKLELH 101>NP_001116151 Length = 2765 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1456 LSKLAIH 1462>XP_005256764 Length = 241 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 +QLSK+ +H Sbjct: 33 MQLSKLELH 41>XP_005256763 Length = 256 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 +QLSK+ +H Sbjct: 48 MQLSKLELH 56>XP_005266009 Length = 2378 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1069 LSKLAIH 1075>XP_006714961 Length = 2548 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1239 LSKLAIH 1245>XP_006714960 Length = 2758 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1449 LSKLAIH 1455>XP_005266007 Length = 2765 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1456 LSKLAIH 1462>NP_001139669 Length = 7081 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QLSKMAIH 9 QLSK A+H Sbjct: 2839 QLSKNAVH 2846>NP_001092286 Length = 2769 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1458 LSKVAIH 1464>NP_001077422 Length = 1953 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>NP_001258573 Length = 894 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>NP_001258572 Length = 937 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>NP_071348 Length = 1953 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>XP_006718561 Length = 2794 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LSKMAIH 9 LSK+AIH Sbjct: 1483 LSKVAIH 1489>XP_006712131 Length = 1453 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>XP_006712128 Length = 1879 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>XP_006712127 Length = 1909 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>XP_006712126 Length = 1913 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 771 MKLSKTAVH 779>XP_006712125 Length = 1952 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>XP_006712124 Length = 1953 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LQLSKMAIH 9 ++LSK A+H Sbjct: 811 MKLSKTAVH 819>NP_031399 Length = 582 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 L LSK +IH Sbjct: 105 LDLSKRSIH 113>NP_001255968 Length = 536 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 L LSK +IH Sbjct: 105 LDLSKRSIH 113>NP_001121902 Length = 1028 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 +QL KMA H Sbjct: 778 MQLRKMANH 786>NP_001121901 Length = 1028 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 +QL KMA H Sbjct: 778 MQLRKMANH 786>NP_064544 Length = 1026 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 +QL KMA H Sbjct: 776 MQLRKMANH 784>NP_001241878 Length = 596 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 +QL KMA H Sbjct: 346 MQLRKMANH 354>XP_006714339 Length = 795 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 +QL KMA H Sbjct: 545 MQLRKMANH 553>XP_006714338 Length = 998 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LQLSKMAIH 9 +QL KMA H Sbjct: 748 MQLRKMANH 756>NP_001188 Length = 160 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QLSKMAIH 9 QLS++A+H Sbjct: 79 QLSEVAMH 86Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.130 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 303,671 Number of extensions: 542 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |