Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 20 299 NP_703147 17 3301 NP_001152860 17 3301 NP_001152859 17 3301 NP_001230500 16 5631 NP_958435 16 5631 NP_057240 16 5631 NP_958438 16 5631 NP_694691 16 5631 NP_694690 16 5631 NP_066576 16 5631 XP_005261866 16 5631 XP_005261865 16 5631 XP_005261864 16 5631 XP_005261863 16 5631 XP_005261862 16 5631 XP_005261861 16 5631 XP_005261860 16 5631 XP_005274432 16 5631 XP_006718999 16 5631 XP_006718998 16 5631 XP_006718997 16 5631 XP_005274431 16 5631 XP_006718996 16 5631 NP_004985 16 7355 NP_001017403 15 9605 NP_067649 15 9605 NP_001017404 15 9605 NP_001273538 15 9605 NP_115507 15 9605 NP_068555 15 9605 NP_056341 15 9605 NP_001186616 15 9605 NP_001186499 15 9605 NP_001229239 15 9605 XP_006724740 15 9605 XP_006724738 15 9605 XP_006715637 15 9605 XP_005267214 15 9605 XP_005267213 15 9605 XP_006715636 15 9605 XP_005267212 15 9605 XP_005267211 15 9605 XP_006711543 15 9605 XP_005245461 15 9605>NP_115927 Length = 1321 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LNRVQRVGF 9 LNRV+RVGF Sbjct: 702 LNRVRRVGF 710>NP_703147 Length = 566 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RVQRVGF 9 R+QRVGF Sbjct: 482 RLQRVGF 488>NP_001152860 Length = 480 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RVQRVGF 9 R+QRVGF Sbjct: 396 RLQRVGF 402>NP_001152859 Length = 506 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 RVQRVGF 9 R+QRVGF Sbjct: 422 RLQRVGF 428>NP_001230500 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>NP_958435 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>NP_057240 Length = 643 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 132 INRVEKIG 139>NP_958438 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>NP_694691 Length = 1161 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 163 NEVERMGF 170>NP_694690 Length = 1170 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 163 NEVERMGF 170>NP_066576 Length = 1198 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 163 NEVERMGF 170>XP_005261866 Length = 1069 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 25 NEVERMGF 32>XP_005261865 Length = 1174 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 176 NEVERMGF 183>XP_005261864 Length = 1183 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 176 NEVERMGF 183>XP_005261863 Length = 1207 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 163 NEVERMGF 170>XP_005261862 Length = 1211 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 176 NEVERMGF 183>XP_005261861 Length = 1220 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 176 NEVERMGF 183>XP_005261860 Length = 1220 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 NRVQRVGF 9 N V+R+GF Sbjct: 176 NEVERMGF 183>XP_005274432 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>XP_006718999 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>XP_006718998 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>XP_006718997 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>XP_005274431 Length = 571 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 60 INRVEKIG 67>XP_006718996 Length = 596 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LNRVQRVG 8 +NRV+++G Sbjct: 85 INRVEKIG 92>NP_004985 Length = 707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LNRVQRVGF 9 LN+V +VG+ Sbjct: 688 LNQVDQVGY 696>NP_001017403 Length = 967 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LNRVQRVGF 9 L R+Q +GF Sbjct: 256 LGRLQELGF 264>NP_067649 Length = 915 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LNRVQRVGF 9 L R+Q +GF Sbjct: 204 LGRLQELGF 212>NP_001017404 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LNRVQRVGF 9 L R+Q +GF Sbjct: 117 LGRLQELGF 125>NP_001273538 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 684 LNRIQR 689>NP_115507 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 849 LNRIQR 854>NP_068555 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LNRVQRV 7 +NRVQ+V Sbjct: 67 INRVQKV 73>NP_056341 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 NRVQRVG 8 +R+QR+G Sbjct: 480 SRIQRIG 486>NP_001186616 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LNRVQRV 7 +NRVQ+V Sbjct: 67 INRVQKV 73>NP_001186499 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 2 NRVQRVG 8 +R+QR+G Sbjct: 480 SRIQRIG 486>NP_001229239 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LNRVQRV 7 +NRVQ+V Sbjct: 67 INRVQKV 73>XP_006724740 Length = 198 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LNRVQRV 7 +NRVQ+V Sbjct: 67 INRVQKV 73>XP_006724738 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LNRVQRV 7 +NRVQ+V Sbjct: 67 INRVQKV 73>XP_006715637 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 684 LNRIQR 689>XP_005267214 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 684 LNRIQR 689>XP_005267213 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 849 LNRIQR 854>XP_006715636 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 849 LNRIQR 854>XP_005267212 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 849 LNRIQR 854>XP_005267211 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LNRVQR 6 LNR+QR Sbjct: 849 LNRIQR 854>XP_006711543 Length = 895 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LNRVQRVGF 9 L R+Q +GF Sbjct: 184 LGRLQELGF 192>XP_005245461 Length = 924 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LNRVQRVGF 9 L R+Q +GF Sbjct: 213 LGRLQELGF 221Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.339 0.153 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 365,404 Number of extensions: 613 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |