Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_361014 19 869 NP_001243998 19 869 NP_001661 16 5631 NP_002838 16 5631 NP_036587 16 5631 XP_006724314 16 5631 XP_006724313 16 5631 XP_006724312 16 5631 XP_006724311 16 5631 XP_006724310 16 5631 XP_006724309 16 5631 XP_005261301 16 5631 XP_006724308 16 5631 XP_005261300 16 5631 XP_006724307 16 5631 XP_005261299 16 5631 XP_006724306 16 5631 XP_005261256 16 5631 XP_005261255 16 5631 XP_005261253 16 5631 XP_005261252 16 5631 XP_006716138 16 5631 XP_006712455 16 5631 XP_005263691 16 5631 NP_570857 16 5631 NP_570858 16 5631 NP_003672 16 5631 NP_714922 16 5631 NP_659570 16 7355 XP_006715976 16 7355 XP_006715975 16 7355 NP_055384 16 7355 NP_002308 15 9605 NP_694979 15 9605 NP_037491 15 9605 NP_079303 15 9605 NP_065166 15 9605 NP_001273296 15 9605 XP_006723895 15 9605 XP_005259334 15 9605 XP_005259333 15 9605 XP_005259263 15 9605 XP_005249715 15 9605 XP_005249714 15 9605 XP_006715730 15 9605 NP_001035751 15 9605>NP_361014 Length = 707 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSVGSQRR 9 LLSVGS+RR Sbjct: 5 LLSVGSKRR 13>NP_001243998 Length = 176 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSVGSQRR 9 LLSVGS+RR Sbjct: 5 LLSVGSKRR 13>NP_001661 Length = 962 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>NP_002838 Length = 1015 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 SVGS+RR Sbjct: 132 SVGSERR 138>NP_036587 Length = 1056 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 902 AVGSQRR 908>XP_006724314 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_006724313 Length = 661 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_006724312 Length = 667 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_006724311 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 540 AVGSQRR 546>XP_006724310 Length = 899 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 540 AVGSQRR 546>XP_006724309 Length = 922 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 521 AVGSQRR 527>XP_005261301 Length = 929 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_006724308 Length = 935 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_005261300 Length = 956 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_006724307 Length = 986 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_005261299 Length = 998 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_006724306 Length = 1004 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 603 AVGSQRR 609>XP_005261256 Length = 239 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSVGSQRR 9 L+ +GSQRR Sbjct: 126 LIVLGSQRR 134>XP_005261255 Length = 272 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSVGSQRR 9 L+ +GSQRR Sbjct: 159 LIVLGSQRR 167>XP_005261253 Length = 321 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSVGSQRR 9 L+ +GSQRR Sbjct: 208 LIVLGSQRR 216>XP_005261252 Length = 364 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSVGSQRR 9 L+ +GSQRR Sbjct: 251 LIVLGSQRR 259>XP_006716138 Length = 858 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 SVGS+RR Sbjct: 132 SVGSERR 138>XP_006712455 Length = 1055 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 901 AVGSQRR 907>XP_005263691 Length = 1056 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 +VGSQRR Sbjct: 902 AVGSQRR 908>NP_570857 Length = 998 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 SVGS+RR Sbjct: 115 SVGSERR 121>NP_570858 Length = 986 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SVGSQRR 9 SVGS+RR Sbjct: 132 SVGSERR 138>NP_003672 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSVGSQRR 9 L+ +GSQRR Sbjct: 199 LIVLGSQRR 207>NP_714922 Length = 309 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLSVGSQR 8 LL+VGS+R Sbjct: 25 LLTVGSER 32>NP_659570 Length = 839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSVGSQR 8 LLS GSQ+ Sbjct: 206 LLSTGSQK 213>XP_006715976 Length = 839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSVGSQR 8 LLS GSQ+ Sbjct: 206 LLSTGSQK 213>XP_006715975 Length = 839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSVGSQR 8 LLS GSQ+ Sbjct: 206 LLSTGSQK 213>NP_055384 Length = 839 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSVGSQR 8 LLS GSQ+ Sbjct: 206 LLSTGSQK 213>NP_002308 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLSVGSQ 7 LLS+GSQ Sbjct: 57 LLSLGSQ 63>NP_694979 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 3 SVGSQR 8>NP_037491 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLSVGSQ 7 LLSVG+Q Sbjct: 66 LLSVGNQ 72>NP_079303 Length = 792 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLSVGSQ 7 LLSVG+Q Sbjct: 98 LLSVGNQ 104>NP_065166 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 238 SVGSQR 243>NP_001273296 Length = 535 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSVGSQRR 9 LLS+GS+ R Sbjct: 526 LLSLGSRTR 534>XP_006723895 Length = 696 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 238 SVGSQR 243>XP_005259334 Length = 702 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLSVGSQ 7 LLSVG+Q Sbjct: 8 LLSVGNQ 14>XP_005259333 Length = 792 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLSVGSQ 7 LLSVG+Q Sbjct: 98 LLSVGNQ 104>XP_005259263 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLSVGSQ 7 LLSVG+Q Sbjct: 66 LLSVGNQ 72>XP_005249715 Length = 516 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 3 SVGSQR 8>XP_005249714 Length = 516 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 3 SVGSQR 8>XP_006715730 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 3 SVGSQR 8>NP_001035751 Length = 530 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SVGSQR 8 SVGSQR Sbjct: 3 SVGSQR 8Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.322 0.135 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 485,378 Number of extensions: 691 Number of successful extensions: 46 Number of sequences better than 10000.0: 46 Number of HSP's gapped: 46 Number of HSP's successfully gapped: 46 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |