Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055726 20 509 NP_055318 17 2528 XP_005254186 17 2528 XP_006719406 17 2528 NP_006456 17 2528 NP_001018125 16 5631 NP_149075 16 5631 XP_005276286 16 5631 XP_005277590 16 5631 XP_005265698 16 5631 XP_005265004 16 5631 XP_006713088 16 5631 XP_006713087 16 5631 XP_005265003 16 5631 XP_006713086 16 5631 XP_006713085 16 5631 XP_006713084 16 5631 XP_005276004 16 5631 NP_001817 16 7355 NP_001093391 16 7355 NP_000405 16 7355 NP_001186221 16 7355 NP_001186220 16 7355 NP_201575 16 7355 NP_001073890 16 7355 XP_006722755 16 7355 NP_000485 15 9605 NP_004388 15 9605 NP_001073919 15 9605 NP_001244120 15 9605 NP_077003 15 9605 NP_001091982 15 9605 NP_056503 15 9605 NP_001194005 15 9605 NP_543024 15 9605 NP_006050 15 9605 XP_006723777 15 9605 XP_005260352 15 9605 XP_005271475 15 9605 XP_005271474 15 9605 XP_006715596 15 9605 XP_005267137 15 9605 XP_006715595 15 9605 XP_005267136 15 9605>NP_055726 Length = 961 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLSKDFAKL 9 LL+KDFAKL Sbjct: 711 LLNKDFAKL 719>NP_055318 Length = 2785 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LL KD+AKL Sbjct: 2161 LLLKDYAKL 2169>XP_005254186 Length = 561 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSKDFAKL 9 +S+DFAKL Sbjct: 202 ISRDFAKL 209>XP_006719406 Length = 2380 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LL KD+AKL Sbjct: 2161 LLLKDYAKL 2169>NP_006456 Length = 560 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LSKDFAKL 9 +S+DFAKL Sbjct: 202 ISRDFAKL 209>NP_001018125 Length = 1451 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>NP_149075 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>XP_005276286 Length = 642 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 250 LFSQDFAK 257>XP_005277590 Length = 900 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 450 LFSQDFAK 457>XP_005265698 Length = 577 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 234 LFSQDFAK 241>XP_005265004 Length = 806 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 38 LFSQDFAK 45>XP_006713088 Length = 1382 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 614 LFSQDFAK 621>XP_006713087 Length = 1432 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>XP_005265003 Length = 1451 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>XP_006713086 Length = 1458 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>XP_006713085 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>XP_006713084 Length = 1471 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 703 LFSQDFAK 710>XP_005276004 Length = 584 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L S+DFAK Sbjct: 241 LFSQDFAK 248>NP_001817 Length = 79 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLSKDFAKL 9 +L KD AKL Sbjct: 23 MLPKDIAKL 31>NP_001093391 Length = 324 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L++KDF K Sbjct: 249 LITKDFVK 256>NP_000405 Length = 736 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 ++ KD+AKL Sbjct: 728 MILKDYAKL 736>NP_001186221 Length = 718 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 ++ KD+AKL Sbjct: 710 MILKDYAKL 718>NP_001186220 Length = 761 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 ++ KD+AKL Sbjct: 753 MILKDYAKL 761>NP_201575 Length = 107 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 L+SK+FA L Sbjct: 83 LISKNFAAL 91>NP_001073890 Length = 1703 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSKDFA 7 ++SKDFA Sbjct: 1235 IISKDFA 1241>XP_006722755 Length = 1722 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSKDFA 7 ++SKDFA Sbjct: 1235 IISKDFA 1241>NP_000485 Length = 1497 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LLS D+A+L Sbjct: 1122 LLSLDYAEL 1130>NP_004388 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LLS+DF ++ Sbjct: 251 LLSQDFVQI 259>NP_001073919 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SKDFAKL 9 SKDF K+ Sbjct: 695 SKDFCKI 701>NP_001244120 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LLS+DF ++ Sbjct: 251 LLSQDFVQI 259>NP_077003 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSKDFAK 8 L+KDFA+ Sbjct: 279 LAKDFAR 285>NP_001091982 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSKDFAKL 9 L +DFAK+ Sbjct: 4 LEEDFAKI 11>NP_056503 Length = 1060 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSKDFAK 8 LSKD+A+ Sbjct: 210 LSKDYAR 216>NP_001194005 Length = 423 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L+SKDF + Sbjct: 269 LISKDFGE 276>NP_543024 Length = 572 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L+SKDF + Sbjct: 269 LISKDFGE 276>NP_006050 Length = 1575 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 +L+KD AKL Sbjct: 1403 VLAKDSAKL 1411>XP_006723777 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L+SKDF + Sbjct: 162 LISKDFGE 169>XP_005260352 Length = 576 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSKDFAK 8 L+SKDF + Sbjct: 269 LISKDFGE 276>XP_005271475 Length = 434 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LLS+DF ++ Sbjct: 202 LLSQDFVQI 210>XP_005271474 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSKDFAKL 9 LLS+DF ++ Sbjct: 251 LLSQDFVQI 259>XP_006715596 Length = 743 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SKDFAKL 9 SKDF K+ Sbjct: 610 SKDFCKI 616>XP_005267137 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SKDFAKL 9 SKDF K+ Sbjct: 695 SKDFCKI 701>XP_006715595 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SKDFAKL 9 SKDF K+ Sbjct: 695 SKDFCKI 701>XP_005267136 Length = 828 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 SKDFAKL 9 SKDF K+ Sbjct: 695 SKDFCKI 701Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.327 0.142 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 490,660 Number of extensions: 555 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |