Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001269596 18 1135 NP_001269595 18 1135 XP_005253308 18 1135 NP_003136 17 2528 NP_000427 17 3301 NP_071403 17 3301 NP_073581 17 4312 NP_003671 16 5631 NP_056046 16 5631 NP_612213 16 5631 XP_006723231 16 5631 XP_005258877 16 5631 XP_005258876 16 5631 XP_006718233 16 5631 NP_054756 16 5631 NP_001025169 16 7355 NP_057264 16 7355 NP_060142 16 7355 NP_059138 16 7355 NP_001265585 16 7355 NP_001012527 16 7355 NP_004166 16 7355 XP_006720645 16 7355 XP_005254546 16 7355 XP_005254545 16 7355 XP_005254544 16 7355 XP_005254543 16 7355 XP_005248368 16 7355 XP_005263333 16 7355 NP_001360 15 9605 NP_001596 15 9605 NP_998763 15 9605 NP_060527 15 9605 NP_877499 15 9605 NP_001265398 15 9605 NP_001265400 15 9605 NP_001265399 15 9605 NP_001265401 15 9605 NP_055841 15 9605 NP_659424 15 9605 NP_001010898 15 9605 NP_057594 15 9605 NP_001193856 15 9605 XP_006726853 15 9605 XP_006723596 15 9605 XP_006721216 15 9605 XP_005268793 15 9605 XP_005268792 15 9605 XP_005268791 15 9605 XP_005268789 15 9605 XP_005268788 15 9605 XP_006715067 15 9605 XP_005248319 15 9605 XP_006710706 15 9605 NP_001956 15 9605>NP_001269596 Length = 955 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLSIGVPLL 9 LLS+G+PLL Sbjct: 913 LLSLGLPLL 921>NP_001269595 Length = 976 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLSIGVPLL 9 LLS+G+PLL Sbjct: 934 LLSLGLPLL 942>XP_005253308 Length = 1012 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLSIGVPLL 9 LLS+G+PLL Sbjct: 970 LLSLGLPLL 978>NP_003136 Length = 183 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LLSIGVPLL 9 L SIG+PLL Sbjct: 158 LPSIGIPLL 166>NP_000427 Length = 520 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 L IG+PLL Sbjct: 321 LGIGIPLL 328>NP_071403 Length = 517 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 L IG+PLL Sbjct: 318 LGIGIPLL 325>NP_073581 Length = 468 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LSIGVPL 8 LS+GVPL Sbjct: 327 LSLGVPL 333>NP_003671 Length = 528 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 L SIGVPL Sbjct: 105 LESIGVPL 112>NP_056046 Length = 1436 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 LLS GVPL Sbjct: 1314 LLSHGVPL 1321>NP_612213 Length = 409 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLSIGVPLL 9 L S+G+P+L Sbjct: 331 LKSVGIPVL 339>XP_006723231 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLSIGVPLL 9 L +GVPLL Sbjct: 149 LFLVGVPLL 157>XP_005258877 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLSIGVPLL 9 L +GVPLL Sbjct: 149 LFLVGVPLL 157>XP_005258876 Length = 818 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLSIGVPLL 9 L +GVPLL Sbjct: 231 LFLVGVPLL 239>XP_006718233 Length = 782 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 LLS GVPL Sbjct: 660 LLSHGVPL 667>NP_054756 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLSIGVPLL 9 L +GVPLL Sbjct: 149 LFLVGVPLL 157>NP_001025169 Length = 340 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LSIGVPLL 9 L++G+P+L Sbjct: 280 LTLGIPML 287>NP_057264 Length = 530 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSIGVP 7 LLS+G+P Sbjct: 60 LLSVGLP 66>NP_060142 Length = 1865 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 1011 LLSFGVP 1017>NP_059138 Length = 1032 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 L +GVP+L Sbjct: 828 LGLGVPML 835>NP_001265585 Length = 126 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSIGVPL 8 +SIGVP+ Sbjct: 1 MSIGVPI 7>NP_001012527 Length = 460 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSIGVP 7 LLS+G+P Sbjct: 60 LLSVGLP 66>NP_004166 Length = 126 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LSIGVPL 8 +SIGVP+ Sbjct: 1 MSIGVPI 7>XP_006720645 Length = 1060 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 1011 LLSFGVP 1017>XP_005254546 Length = 1443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 569 LLSFGVP 575>XP_005254545 Length = 1864 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 1011 LLSFGVP 1017>XP_005254544 Length = 1884 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 1011 LLSFGVP 1017>XP_005254543 Length = 1885 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 1011 LLSFGVP 1017>XP_005248368 Length = 243 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSIGVP 7 LLS+G+P Sbjct: 60 LLSVGLP 66>XP_005263333 Length = 358 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LSIGVPLL 9 L++G+P+L Sbjct: 280 LTLGIPML 287>NP_001360 Length = 4624 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 LS+G PLL Sbjct: 3641 LSLGRPLL 3648>NP_001596 Length = 968 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 ++SIGVP+ Sbjct: 696 VVSIGVPV 703>NP_998763 Length = 600 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 L+S+G PL Sbjct: 45 LMSLGCPL 52>NP_060527 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 L+ IG+PL Sbjct: 107 LMVIGIPL 114>NP_877499 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 L+ IG+PL Sbjct: 107 LMVIGIPL 114>NP_001265398 Length = 1675 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1469 VLSIGLPV 1476>NP_001265400 Length = 1688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1440 VLSIGLPV 1447>NP_001265399 Length = 1711 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1463 VLSIGLPV 1470>NP_001265401 Length = 1645 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1397 VLSIGLPV 1404>NP_055841 Length = 1717 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1469 VLSIGLPV 1476>NP_659424 Length = 202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SIGVPLL 9 +IGVPL+ Sbjct: 150 TIGVPLI 156>NP_001010898 Length = 727 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 L+ IG+PL Sbjct: 106 LIIIGIPL 113>NP_057594 Length = 453 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS GVP Sbjct: 408 LLSYGVP 414>NP_001193856 Length = 4707 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 LS+G PLL Sbjct: 3723 LSLGRPLL 3730>XP_006726853 Length = 707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSIGVP 7 LLS+G+P Sbjct: 75 LLSLGLP 81>XP_006723596 Length = 707 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLSIGVP 7 LLS+G+P Sbjct: 75 LLSLGLP 81>XP_006721216 Length = 877 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 ++SIGVP+ Sbjct: 696 VVSIGVPV 703>XP_005268793 Length = 1162 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 914 VLSIGLPV 921>XP_005268792 Length = 1646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1398 VLSIGLPV 1405>XP_005268791 Length = 1646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1398 VLSIGLPV 1405>XP_005268789 Length = 1712 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1464 VLSIGLPV 1471>XP_005268788 Length = 1718 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLSIGVPL 8 +LSIG+P+ Sbjct: 1470 VLSIGLPV 1477>XP_006715067 Length = 4707 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 LS+G PLL Sbjct: 3723 LSLGRPLL 3730>XP_005248319 Length = 4609 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LSIGVPLL 9 LS+G PLL Sbjct: 3626 LSLGRPLL 3633>XP_006710706 Length = 727 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LLSIGVPL 8 L+ IG+PL Sbjct: 106 LIIIGIPL 113>NP_001956 Length = 589 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LLSIGVP 7 LLS+G P Sbjct: 313 LLSVGAP 319Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.160 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 635,897 Number of extensions: 1058 Number of successful extensions: 55 Number of sequences better than 10000.0: 55 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 55 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |