Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 20 509 NP_001273538 17 3301 NP_115507 17 3301 XP_006715637 17 3301 XP_005267214 17 3301 XP_005267213 17 3301 XP_006715636 17 3301 XP_005267212 17 3301 XP_005267211 17 3301 NP_001230500 17 4312 NP_958435 17 4312 NP_057240 17 4312 NP_958438 17 4312 NP_006471 17 4312 NP_001258709 17 4312 NP_055629 17 4312 NP_001258708 17 4312 NP_001258710 17 4312 XP_005274432 17 4312 XP_006718999 17 4312 XP_006718998 17 4312 XP_006718997 17 4312 XP_005274431 17 4312 XP_006718996 17 4312 XP_005265851 17 4312 XP_006713494 17 4312 XP_005265676 17 4312 XP_005265675 17 4312 NP_001171441 16 5631 NP_444506 16 5631 NP_001171442 16 5631 NP_001171440 16 5631 XP_005264424 16 5631 NP_001231634 16 7355 NP_068555 16 7355 NP_057073 16 7355 NP_001186616 16 7355 NP_001229239 16 7355 NP_001231635 16 7355 XP_006724740 16 7355 XP_006724738 16 7355 XP_005269011 16 7355 XP_006719510 16 7355 XP_005269008 16 7355 NP_002723 16 7355 NP_001367 15 9605 NP_001193583 15 9605 NP_001070729 15 9605 NP_056341 15 9605 NP_001186499 15 9605>NP_115927 Length = 1321 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 LLNRV+RVG Sbjct: 701 LLNRVRRVG 709>NP_001273538 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 683 LLNRIQR 689>NP_115507 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 848 LLNRIQR 854>XP_006715637 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 683 LLNRIQR 689>XP_005267214 Length = 702 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 683 LLNRIQR 689>XP_005267213 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 848 LLNRIQR 854>XP_006715636 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 848 LLNRIQR 854>XP_005267212 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 848 LLNRIQR 854>XP_005267211 Length = 867 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 LLNR+QR Sbjct: 848 LLNRIQR 854>NP_001230500 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>NP_958435 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>NP_057240 Length = 643 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 131 VINRVEKIG 139>NP_958438 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>NP_006471 Length = 566 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LLNRVQRVG 9 LLNRVQ G Sbjct: 504 LLNRVQSSG 512>NP_001258709 Length = 351 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 338 LLNRVQKL 345>NP_055629 Length = 389 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 376 LLNRVQKL 383>NP_001258708 Length = 442 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 429 LLNRVQKL 436>NP_001258710 Length = 350 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 337 LLNRVQKL 344>XP_005274432 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>XP_006718999 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>XP_006718998 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>XP_006718997 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>XP_005274431 Length = 571 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 59 VINRVEKIG 67>XP_006718996 Length = 596 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 LLNRVQRVG 9 ++NRV+++G Sbjct: 84 VINRVEKIG 92>XP_005265851 Length = 567 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LLNRVQRVG 9 LLNRVQ G Sbjct: 505 LLNRVQSSG 513>XP_006713494 Length = 340 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 327 LLNRVQKL 334>XP_005265676 Length = 340 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 327 LLNRVQKL 334>XP_005265675 Length = 410 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 LLNRVQ++ Sbjct: 397 LLNRVQKL 404>NP_001171441 Length = 657 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 +LN ++RVG Sbjct: 537 ILNAIKRVG 545>NP_444506 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 +LN ++RVG Sbjct: 573 ILNAIKRVG 581>NP_001171442 Length = 656 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 +LN ++RVG Sbjct: 536 ILNAIKRVG 544>NP_001171440 Length = 678 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 +LN ++RVG Sbjct: 558 ILNAIKRVG 566>XP_005264424 Length = 424 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 +LN ++RVG Sbjct: 304 ILNAIKRVG 312>NP_001231634 Length = 493 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 LLN ++R+G Sbjct: 482 LLNELERLG 490>NP_068555 Length = 297 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 ++NRVQ+V Sbjct: 66 VINRVQKV 73>NP_057073 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 LLN ++R+G Sbjct: 509 LLNELERLG 517>NP_001186616 Length = 297 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 ++NRVQ+V Sbjct: 66 VINRVQKV 73>NP_001229239 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 ++NRVQ+V Sbjct: 66 VINRVQKV 73>NP_001231635 Length = 260 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 LLN ++R+G Sbjct: 249 LLNELERLG 257>XP_006724740 Length = 198 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 ++NRVQ+V Sbjct: 66 VINRVQKV 73>XP_006724738 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 LLNRVQRV 8 ++NRVQ+V Sbjct: 66 VINRVQKV 73>XP_005269011 Length = 391 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 LLN ++R+G Sbjct: 380 LLNELERLG 388>XP_006719510 Length = 520 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 LLN ++R+G Sbjct: 509 LLNELERLG 517>XP_005269008 Length = 589 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 LLN ++R+G Sbjct: 578 LLNELERLG 586>NP_002723 Length = 351 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LLNRVQRVG 9 + +R+QRVG Sbjct: 129 MFSRLQRVG 137>NP_001367 Length = 4646 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LLNRVQR 7 +LNRVQ+ Sbjct: 877 ILNRVQK 883>NP_001193583 Length = 2504 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLNRVQRVG 9 L R+QRVG Sbjct: 346 LQERMQRVG 354>NP_001070729 Length = 2458 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LLNRVQRVG 9 L R+QRVG Sbjct: 346 LQERMQRVG 354>NP_056341 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 NRVQRVG 9 +R+QR+G Sbjct: 480 SRIQRIG 486>NP_001186499 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 NRVQRVG 9 +R+QR+G Sbjct: 480 SRIQRIG 486Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.149 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 373,190 Number of extensions: 710 Number of successful extensions: 50 Number of sequences better than 10000.0: 50 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 50 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |