Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_009052 20 299 NP_001243576 20 299 NP_005684 19 665 NP_001238863 19 665 NP_001123573 19 665 NP_001238864 19 665 NP_001123574 19 665 XP_005252775 19 665 XP_006718179 19 665 XP_005252773 19 665 XP_005252772 19 665 XP_005252770 19 665 XP_005252767 19 665 XP_005252766 19 665 XP_006718178 19 665 XP_006718177 19 665 XP_005252764 19 665 XP_005252763 19 665 XP_006718176 19 665 XP_006718175 19 665 XP_005252762 19 665 NP_065816 17 3301 XP_006710573 17 3301 XP_006710572 17 3301 XP_006710571 17 3301 XP_006710570 17 3301 XP_006710569 17 3301 XP_006710568 17 3301 XP_006710567 17 3301 XP_006710566 17 3301 XP_005245859 17 3301 NP_005262 16 7355 NP_938073 16 7355 NP_112588 16 7355 NP_001014764 16 7355 XP_005244801 16 7355 XP_006710664 16 7355 XP_006710663 16 7355 NP_005884 15 9605>NP_009052 Length = 461 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+TARRYN Sbjct: 313 LLETARRYN 321>NP_001243576 Length = 364 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+TARRYN Sbjct: 216 LLETARRYN 224>NP_005684 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>NP_001238863 Length = 453 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 305 LLETSRRYN 313>NP_001123573 Length = 387 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 239 LLETSRRYN 247>NP_001238864 Length = 453 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 305 LLETSRRYN 313>NP_001123574 Length = 402 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 254 LLETSRRYN 262>XP_005252775 Length = 253 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 105 LLETSRRYN 113>XP_006718179 Length = 402 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 254 LLETSRRYN 262>XP_005252773 Length = 313 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 165 LLETSRRYN 173>XP_005252772 Length = 358 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 210 LLETSRRYN 218>XP_005252770 Length = 387 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 239 LLETSRRYN 247>XP_005252767 Length = 402 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 254 LLETSRRYN 262>XP_005252766 Length = 402 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 254 LLETSRRYN 262>XP_006718178 Length = 402 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 254 LLETSRRYN 262>XP_006718177 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>XP_005252764 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>XP_005252763 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>XP_006718176 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>XP_006718175 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>XP_005252762 Length = 447 Score = 19.2 bits (38), Expect = 665 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 LLKTARRYN 9 LL+T+RRYN Sbjct: 299 LLETSRRYN 307>NP_065816 Length = 5183 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4314 IETAKRYN 4321>XP_006710573 Length = 5177 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4308 IETAKRYN 4315>XP_006710572 Length = 5188 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4319 IETAKRYN 4326>XP_006710571 Length = 5194 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4325 IETAKRYN 4332>XP_006710570 Length = 5195 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4326 IETAKRYN 4333>XP_006710569 Length = 5212 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4343 IETAKRYN 4350>XP_006710568 Length = 5221 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4352 IETAKRYN 4359>XP_006710567 Length = 5222 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4353 IETAKRYN 4360>XP_006710566 Length = 5222 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4353 IETAKRYN 4360>XP_005245859 Length = 5223 Score = 16.9 bits (32), Expect = 3301 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LKTARRYN 9 ++TA+RYN Sbjct: 4354 IETAKRYN 4361>NP_005262 Length = 558 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 LLKTARRYN 9 +++TA +YN Sbjct: 521 IMRTAMKYN 529>NP_938073 Length = 642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LLKTARRY 8 LLK A RY Sbjct: 209 LLKAAHRY 216>NP_112588 Length = 110 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLKTARRYN 9 +LK RR+N Sbjct: 67 ILKAGRRWN 75>NP_001014764 Length = 110 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LLKTARRYN 9 +LK RR+N Sbjct: 67 ILKAGRRWN 75>XP_005244801 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LLKTARRY 8 LLK A RY Sbjct: 157 LLKAAHRY 164>XP_006710664 Length = 463 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LLKTARRY 8 LLK A RY Sbjct: 209 LLKAAHRY 216>XP_006710663 Length = 665 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LLKTARRY 8 LLK A RY Sbjct: 209 LLKAAHRY 216>NP_005884 Length = 588 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LKTARRYN 9 LKTA RY+ Sbjct: 342 LKTAWRYD 349Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.136 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 375,515 Number of extensions: 687 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |