Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 18 1935 XP_006718908 18 1935 XP_005271621 18 1935 XP_006718907 18 1935 XP_006718906 18 1935 XP_005271619 18 1935 XP_005271618 18 1935 NP_004685 17 3301 NP_001167637 17 3301 XP_006722232 17 3301 XP_005257846 17 3301 NP_076409 17 4312 NP_001165402 16 5631 NP_001165401 16 5631 NP_071407 16 5631 NP_775760 16 5631 XP_006718005 16 5631 XP_006718004 16 5631 XP_006718003 16 5631 XP_005275746 16 5631 XP_003403671 16 5631 XP_006710003 16 5631 NP_653267 16 7355 NP_002636 16 7355 XP_005253037 16 7355 XP_005253036 16 7355 XP_005253035 16 7355 XP_005253034 16 7355 NP_001153844 15 9605 NP_113654 15 9605 NP_065944 15 9605 NP_001138462 15 9605 NP_002971 15 9605 NP_060249 15 9605 XP_006716727 15 9605 XP_005251134 15 9605 XP_005263787 15 9605 XP_006712747 15 9605 XP_006712746 15 9605>NP_000042 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 1647 LVVNLLQLS 1655>XP_006718908 Length = 1708 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 299 LVVNLLQLS 307>XP_005271621 Length = 2708 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 1299 LVVNLLQLS 1307>XP_006718907 Length = 3050 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 1641 LVVNLLQLS 1649>XP_006718906 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 1647 LVVNLLQLS 1655>XP_005271619 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 1647 LVVNLLQLS 1655>XP_005271618 Length = 3056 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 L VNLLQLS Sbjct: 1647 LVVNLLQLS 1655>NP_004685 Length = 523 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 LFV LLQL+ Sbjct: 184 LFVGLLQLN 192>NP_001167637 Length = 523 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 LFV LLQL+ Sbjct: 184 LFVGLLQLN 192>XP_006722232 Length = 523 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 LFV LLQL+ Sbjct: 184 LFVGLLQLN 192>XP_005257846 Length = 523 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 LFV LLQL+ Sbjct: 184 LFVGLLQLN 192>NP_076409 Length = 303 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LFVNLLQLS 9 LF+NL+Q++ Sbjct: 141 LFLNLIQIN 149>NP_001165402 Length = 1061 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 876 VFVNLLDLN 884>NP_001165401 Length = 1381 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 876 VFVNLLDLN 884>NP_071407 Length = 3354 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 876 VFVNLLDLN 884>NP_775760 Length = 1585 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LFVNLLQ 7 +F+NLLQ Sbjct: 276 IFINLLQ 282>XP_006718005 Length = 3397 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 919 VFVNLLDLN 927>XP_006718004 Length = 3399 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 921 VFVNLLDLN 929>XP_006718003 Length = 3419 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 941 VFVNLLDLN 949>XP_005275746 Length = 3352 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 874 VFVNLLDLN 882>XP_003403671 Length = 3354 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 876 VFVNLLDLN 884>XP_006710003 Length = 3374 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +FVNLL L+ Sbjct: 896 VFVNLLDLN 904>NP_653267 Length = 4753 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 LF+ LLQL+ Sbjct: 3029 LFLRLLQLA 3037>NP_002636 Length = 1686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LFVNLLQL 8 LF+NLL L Sbjct: 1329 LFLNLLSL 1336>XP_005253037 Length = 1306 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LFVNLLQL 8 LF+NLL L Sbjct: 949 LFLNLLSL 956>XP_005253036 Length = 1686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LFVNLLQL 8 LF+NLL L Sbjct: 1329 LFLNLLSL 1336>XP_005253035 Length = 1686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LFVNLLQL 8 LF+NLL L Sbjct: 1329 LFLNLLSL 1336>XP_005253034 Length = 1686 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LFVNLLQL 8 LF+NLL L Sbjct: 1329 LFLNLLSL 1336>NP_001153844 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +++NL QLS Sbjct: 372 VYINLRQLS 380>NP_113654 Length = 1246 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +++NL QLS Sbjct: 470 VYINLRQLS 478>NP_065944 Length = 1701 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LFVNLLQ 7 LFVNL++ Sbjct: 325 LFVNLME 331>NP_001138462 Length = 1742 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LFVNLLQLS 9 LF+NLL S Sbjct: 495 LFINLLNES 503>NP_002971 Length = 440 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LFVNLLQL 8 LF+N+L++ Sbjct: 312 LFINILRI 319>NP_060249 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LFVNLLQL 8 LFVN+L L Sbjct: 298 LFVNILGL 305>XP_006716727 Length = 1139 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +++NL QLS Sbjct: 363 VYINLRQLS 371>XP_005251134 Length = 1148 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LFVNLLQLS 9 +++NL QLS Sbjct: 372 VYINLRQLS 380>XP_005263787 Length = 262 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LFVNLLQL 8 LF+N+L++ Sbjct: 134 LFINILRI 141>XP_006712747 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LFVNLLQL 8 LF+N+L++ Sbjct: 157 LFINILRI 164>XP_006712746 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LFVNLLQL 8 LF+N+L++ Sbjct: 312 LFINILRI 319Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.152 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 364,580 Number of extensions: 526 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |