Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 18 1935 XP_006714104 18 1935 XP_005265800 18 1935 XP_006714103 18 1935 XP_006714102 18 1935 NP_071379 15 9605 XP_005260849 15 9605 NP_942093 15 9605>NP_006197 Length = 1089 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVMVLEVS 9 LFV VLEVS Sbjct: 80 LFVTVLEVS 88>XP_006714104 Length = 832 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVMVLEVS 9 LFV VLEVS Sbjct: 105 LFVTVLEVS 113>XP_005265800 Length = 1089 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVMVLEVS 9 LFV VLEVS Sbjct: 80 LFVTVLEVS 88>XP_006714103 Length = 1111 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVMVLEVS 9 LFV VLEVS Sbjct: 102 LFVTVLEVS 110>XP_006714102 Length = 1114 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LFVMVLEVS 9 LFV VLEVS Sbjct: 105 LFVTVLEVS 113>NP_071379 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 FVMVLE 7 FVMVLE Sbjct: 359 FVMVLE 364>XP_005260849 Length = 587 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 FVMVLE 7 FVMVLE Sbjct: 170 FVMVLE 175>NP_942093 Length = 776 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 FVMVLE 7 FVMVLE Sbjct: 359 FVMVLE 364Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.342 0.151 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 235,211 Number of extensions: 197 Number of successful extensions: 8 Number of sequences better than 10000.0: 8 Number of HSP's gapped: 8 Number of HSP's successfully gapped: 8 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |