Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_073713 19 665 NP_219480 17 3301 NP_001029344 17 3301 XP_005251528 17 4312 XP_006716837 17 4312 XP_005251525 17 4312 XP_006716836 17 4312 XP_005251524 17 4312 NP_003491 16 7355 XP_006713403 16 7355 XP_005265563 16 7355 XP_005265562 16 7355 NP_112564 15 9605 NP_001278206 15 9605 NP_002449 15 9605 NP_001034759 15 9605 NP_542768 15 9605 XP_006719042 15 9605 XP_006719041 15 9605 XP_006719040 15 9605 XP_006719039 15 9605 XP_006719038 15 9605 XP_006719037 15 9605 XP_006719036 15 9605 NP_001180386 15 9605>NP_073713 Length = 985 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LETATTYSA 9 LETA TYSA Sbjct: 415 LETAATYSA 423>NP_219480 Length = 297 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LETATTYSA 9 L TATT+SA Sbjct: 201 LPTATTHSA 209>NP_001029344 Length = 307 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LETATTYSA 9 L TATT+SA Sbjct: 211 LPTATTHSA 219>XP_005251528 Length = 318 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 TATTY+A Sbjct: 216 TATTYTA 222>XP_006716837 Length = 503 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 TATTY+A Sbjct: 468 TATTYTA 474>XP_005251525 Length = 566 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 TATTY+A Sbjct: 464 TATTYTA 470>XP_006716836 Length = 569 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 TATTY+A Sbjct: 467 TATTYTA 473>XP_005251524 Length = 570 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 TATTY+A Sbjct: 468 TATTYTA 474>NP_003491 Length = 681 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LETATTYSA 9 LET TY A Sbjct: 165 LETEATYDA 173>XP_006713403 Length = 583 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LETATTYSA 9 LET TY A Sbjct: 67 LETEATYDA 75>XP_005265563 Length = 611 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LETATTYSA 9 LET TY A Sbjct: 95 LETEATYDA 103>XP_005265562 Length = 681 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LETATTYSA 9 LET TY A Sbjct: 165 LETEATYDA 173>NP_112564 Length = 409 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LETATTY 7 +ETAT+Y Sbjct: 270 VETATSY 276>NP_001278206 Length = 409 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LETATTY 7 +ETAT+Y Sbjct: 270 VETATSY 276>NP_002449 Length = 5762 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 LETATT 6 LETATT Sbjct: 1616 LETATT 1621>NP_001034759 Length = 563 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>NP_542768 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719042 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719041 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719040 Length = 559 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719039 Length = 560 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719038 Length = 562 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719037 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>XP_006719036 Length = 570 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187>NP_001180386 Length = 571 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 TATTYSA 9 T+TTYS+ Sbjct: 181 TSTTYSS 187Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.295 0.102 0.244 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 425,864 Number of extensions: 565 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |