Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1935 NP_001263689 18 1935 NP_001119584 18 1935 NP_001119586 18 1935 NP_001263625 18 1935 NP_001119590 18 1935 NP_001263690 18 1935 NP_001119585 18 1935 NP_001263624 18 1935 NP_001119588 18 1935 NP_001119587 18 1935 NP_001119589 18 1935 NP_001263627 18 1935 NP_001263628 18 1935 NP_001263626 18 1935 XP_005258050 17 2528 NP_060029 17 2528 NP_071741 17 3301 XP_006714035 17 3301 XP_006714034 17 3301 NP_071428 16 5631 NP_001253967 16 5631 XP_006714731 16 5631 NP_060142 16 7355 NP_065961 16 7355 NP_001158137 16 7355 XP_005254546 16 7355 XP_005254545 16 7355 XP_005254544 16 7355 XP_005254543 16 7355 XP_006716134 16 7355 NP_001009899 15 9605 NP_002413 15 9605 NP_689598 15 9605 NP_001129070 15 9605 XP_005247266 15 9605 XP_005247265 15 9605 XP_006712003 15 9605 XP_006712002 15 9605 XP_006712001 15 9605 XP_005264195 15 9605 XP_006712000 15 9605 XP_005264194 15 9605 XP_005264193 15 9605>NP_000537 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 257 LEDSSGNLL 265>NP_001263689 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 218 LEDSSGNLL 226>NP_001119584 Length = 393 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 257 LEDSSGNLL 265>NP_001119586 Length = 341 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 257 LEDSSGNLL 265>NP_001263625 Length = 302 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 218 LEDSSGNLL 226>NP_001119590 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 218 LEDSSGNLL 226>NP_001263690 Length = 354 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 218 LEDSSGNLL 226>NP_001119585 Length = 346 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 257 LEDSSGNLL 265>NP_001263624 Length = 307 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 218 LEDSSGNLL 226>NP_001119588 Length = 209 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 125 LEDSSGNLL 133>NP_001119587 Length = 261 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 125 LEDSSGNLL 133>NP_001119589 Length = 214 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 125 LEDSSGNLL 133>NP_001263627 Length = 182 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 98 LEDSSGNLL 106>NP_001263628 Length = 187 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 98 LEDSSGNLL 106>NP_001263626 Length = 234 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LEDSS NLL Sbjct: 98 LEDSSGNLL 106>XP_005258050 Length = 330 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LED ++NLL Sbjct: 62 LEDDTINLL 70>NP_060029 Length = 324 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LED ++NLL Sbjct: 62 LEDDTINLL 70>NP_071741 Length = 1015 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LED+ +NLL Sbjct: 528 LEDARINLL 536>XP_006714035 Length = 941 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LED+ +NLL Sbjct: 528 LEDARINLL 536>XP_006714034 Length = 941 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LED+ +NLL Sbjct: 528 LEDARINLL 536>NP_071428 Length = 269 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LEDSSVNLL 9 +++SSVNL+ Sbjct: 202 IQESSVNLI 210>NP_001253967 Length = 269 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LEDSSVNLL 9 +++SSVNL+ Sbjct: 202 IQESSVNLI 210>XP_006714731 Length = 225 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LEDSSVNLL 9 +++SSVNL+ Sbjct: 202 IQESSVNLI 210>NP_060142 Length = 1865 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LE+SS N+L Sbjct: 1587 LEESSPNIL 1595>NP_065961 Length = 1934 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LEDSSVNLL 9 LE+SS++L+ Sbjct: 456 LEESSISLM 464>NP_001158137 Length = 1950 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LEDSSVNLL 9 LE+SS++L+ Sbjct: 456 LEESSISLM 464>XP_005254546 Length = 1443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LE+SS N+L Sbjct: 1165 LEESSPNIL 1173>XP_005254545 Length = 1864 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LE+SS N+L Sbjct: 1586 LEESSPNIL 1594>XP_005254544 Length = 1884 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LE+SS N+L Sbjct: 1606 LEESSPNIL 1614>XP_005254543 Length = 1885 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LEDSSVNLL 9 LE+SS N+L Sbjct: 1607 LEESSPNIL 1615>XP_006716134 Length = 1847 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LEDSSVNLL 9 LE+SS++L+ Sbjct: 380 LEESSISLM 388>NP_001009899 Length = 2245 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DSSVNL 8 DSSVNL Sbjct: 1040 DSSVNL 1045>NP_002413 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 EDSSVNLL 9 ED+S+NL+ Sbjct: 27 EDTSMNLV 34>NP_689598 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 574 EDDAVNLM 581>NP_001129070 Length = 464 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 452 EDDAVNLM 459>XP_005247266 Length = 2189 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DSSVNL 8 DSSVNL Sbjct: 984 DSSVNL 989>XP_005247265 Length = 2211 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 DSSVNL 8 DSSVNL Sbjct: 1006 DSSVNL 1011>XP_006712003 Length = 256 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 244 EDDAVNLM 251>XP_006712002 Length = 292 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 280 EDDAVNLM 287>XP_006712001 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 294 EDDAVNLM 301>XP_005264195 Length = 460 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 448 EDDAVNLM 455>XP_006712000 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 465 EDDAVNLM 472>XP_005264194 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 508 EDDAVNLM 515>XP_005264193 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 EDSSVNLL 9 ED +VNL+ Sbjct: 574 EDDAVNLM 581Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.127 0.296 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 593,094 Number of extensions: 1160 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |