Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004351 20 299 NP_078858 18 1935 NP_001278232 18 1935 NP_001278214 18 1935 NP_001398 17 3301 NP_057595 17 3301 XP_005253440 17 3301 NP_001191304 17 4312 NP_000899 17 4312 NP_001191305 17 4312 XP_005248366 17 4312 NP_001140168 16 5631 NP_001140167 16 5631 NP_057121 16 5631 NP_055876 16 5631 NP_001140166 16 5631 XP_006716804 16 5631 NP_000483 16 7355 NP_001351 16 7355 NP_001157289 16 7355 NP_055061 16 7355 XP_006724446 16 7355 XP_006715905 16 7355>NP_004351 Length = 882 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LDFAAKQQY 9 LDF AKQQY Sbjct: 442 LDFEAKQQY 450>NP_078858 Length = 4981 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDFAAKQQY 9 LDF A++QY Sbjct: 311 LDFEARRQY 319Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LDFAAKQQY 9 LDF KQ Y Sbjct: 3256 LDFETKQSY 3264>NP_001278232 Length = 4983 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDFAAKQQY 9 LDF A++QY Sbjct: 311 LDFEARRQY 319Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LDFAAKQQY 9 LDF KQ Y Sbjct: 3258 LDFETKQSY 3266>NP_001278214 Length = 4982 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LDFAAKQQY 9 LDF A++QY Sbjct: 311 LDFEARRQY 319Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 LDFAAKQQY 9 LDF KQ Y Sbjct: 3258 LDFETKQSY 3266>NP_001398 Length = 3312 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LDFAAKQQY 9 LD+ A+Q+Y Sbjct: 1130 LDYEARQEY 1138>NP_057595 Length = 280 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDFAAKQQY 9 L+FAA Q Y Sbjct: 181 LEFAASQSY 189>XP_005253440 Length = 247 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LDFAAKQQY 9 L+FAA Q Y Sbjct: 148 LEFAASQSY 156>NP_001191304 Length = 541 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 DFAAKQQY 9 DF AKQ Y Sbjct: 309 DFEAKQAY 316>NP_000899 Length = 540 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 DFAAKQQY 9 DF AKQ Y Sbjct: 309 DFEAKQAY 316>NP_001191305 Length = 324 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 DFAAKQQY 9 DF AKQ Y Sbjct: 93 DFEAKQAY 100>XP_005248366 Length = 325 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 DFAAKQQY 9 DF AKQ Y Sbjct: 93 DFEAKQAY 100>NP_001140168 Length = 835 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DFAAKQQY 9 +FAA+Q+Y Sbjct: 649 NFAAEQEY 656>NP_001140167 Length = 813 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DFAAKQQY 9 +FAA+Q+Y Sbjct: 627 NFAAEQEY 634>NP_057121 Length = 253 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 LDFAAKQQ 8 LDF KQQ Sbjct: 126 LDFQGKQQ 133>NP_055876 Length = 1056 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DFAAKQQY 9 +FAA+Q+Y Sbjct: 627 NFAAEQEY 634>NP_001140166 Length = 1047 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DFAAKQQY 9 +FAA+Q+Y Sbjct: 627 NFAAEQEY 634>XP_006716804 Length = 1089 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 DFAAKQQY 9 +FAA+Q+Y Sbjct: 627 NFAAEQEY 634>NP_000483 Length = 1480 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 DFAAKQQY 9 DF KQ+Y Sbjct: 373 DFLQKQEY 380>NP_001351 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDFAAKQQ 8 L FAAKQ+ Sbjct: 253 LSFAAKQR 260>NP_001157289 Length = 475 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LDFAAKQQ 8 L FAAKQ+ Sbjct: 253 LSFAAKQR 260>NP_055061 Length = 3014 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LDFAAKQQY 9 LD+ +QQY Sbjct: 750 LDYKQEQQY 758>XP_006724446 Length = 3019 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LDFAAKQQY 9 LD+ +QQY Sbjct: 750 LDYKQEQQY 758>XP_006715905 Length = 1588 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 DFAAKQQY 9 DF KQ+Y Sbjct: 481 DFLQKQEY 488Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 425,148 Number of extensions: 579 Number of successful extensions: 26 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 26 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |