Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_006710201 18 1935 NP_006784 17 2528 NP_733751 17 2528 XP_006716142 17 2528 XP_005250088 17 2528 XP_006716141 17 2528 XP_005250085 17 2528 XP_006716140 17 2528 XP_005250084 17 2528 XP_005250083 17 2528 XP_005250082 17 2528 NP_056370 17 3301 NP_001026794 17 3301 XP_005249051 17 3301 NP_112495 16 5631 NP_940939 16 7355 NP_001005335 16 7355 NP_001524 16 7355 NP_001182237 16 7355 NP_055429 16 7355 NP_003654 16 7355 NP_006050 16 7355 XP_006722811 16 7355 XP_005259960 16 7355 XP_005267544 16 7355 XP_006716984 16 7355 NP_001008391 16 7355 NP_115499 15 9605 NP_954648 15 9605 NP_954649 15 9605 NP_689543 15 9605 NP_001092108 15 9605 NP_001035946 15 9605 NP_001253976 15 9605 NP_001253975 15 9605 XP_006720093 15 9605 XP_006720092 15 9605 XP_005272378 15 9605 NP_038460 15 9605>XP_006710201 Length = 333 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LCSSTAQA 8 LCSSTA A Sbjct: 171 LCSSTASA 178>NP_006784 Length = 256 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 LCS ++QAK Sbjct: 44 LCSGSSQAK 52>NP_733751 Length = 4911 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4245 LYSSTAQAK 4253>XP_006716142 Length = 4927 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4261 LYSSTAQAK 4269>XP_005250088 Length = 4928 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4262 LYSSTAQAK 4270>XP_006716141 Length = 4959 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4293 LYSSTAQAK 4301>XP_005250085 Length = 4979 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4317 LYSSTAQAK 4325>XP_006716140 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4316 LYSSTAQAK 4324>XP_005250084 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4316 LYSSTAQAK 4324>XP_005250083 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4316 LYSSTAQAK 4324>XP_005250082 Length = 4983 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LCSSTAQAK 9 L SSTAQAK Sbjct: 4317 LYSSTAQAK 4325>NP_056370 Length = 1013 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCSSTAQ 7 LCS+TAQ Sbjct: 757 LCSATAQ 763>NP_001026794 Length = 1061 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCSSTAQ 7 LCS+TAQ Sbjct: 757 LCSATAQ 763>XP_005249051 Length = 975 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCSSTAQ 7 LCS+TAQ Sbjct: 757 LCSATAQ 763>NP_112495 Length = 620 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CSSTAQAK 9 CS+T Q+K Sbjct: 136 CSTTTQSK 143>NP_940939 Length = 299 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCSSTAQA 8 +C STA+A Sbjct: 67 VCQSTAEA 74>NP_001005335 Length = 456 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LCSSTAQ 7 LC STAQ Sbjct: 447 LCFSTAQ 453>NP_001524 Length = 589 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 LCSSTAQ 7 LC STAQ Sbjct: 580 LCFSTAQ 586>NP_001182237 Length = 167 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CSSTAQAK 9 C+STAQ + Sbjct: 92 CNSTAQTE 99>NP_055429 Length = 1843 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCSSTAQ 7 LCS+TA+ Sbjct: 536 LCSATAE 542>NP_003654 Length = 167 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CSSTAQAK 9 C+STAQ + Sbjct: 92 CNSTAQTE 99>NP_006050 Length = 1575 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCSSTAQ 7 +C+STAQ Sbjct: 488 VCASTAQ 494>XP_006722811 Length = 335 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCSSTAQA 8 +C STA+A Sbjct: 140 VCQSTAEA 147>XP_005259960 Length = 372 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCSSTAQA 8 +C STA+A Sbjct: 140 VCQSTAEA 147>XP_005267544 Length = 1158 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LCSSTAQAK 9 LC S AQA+ Sbjct: 26 LCHSGAQAR 34>XP_006716984 Length = 1259 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 LCSSTAQ 7 +C+STAQ Sbjct: 488 VCASTAQ 494>NP_001008391 Length = 167 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 CSSTAQAK 9 C+STAQ + Sbjct: 92 CNSTAQTE 99>NP_115499 Length = 633 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LCSSTAQ 7 LC +TAQ Sbjct: 247 LCQATAQ 253>NP_954648 Length = 583 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LCSSTAQ 7 LC +TAQ Sbjct: 197 LCQATAQ 203>NP_954649 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LCSSTAQ 7 LC +TAQ Sbjct: 247 LCQATAQ 253>NP_689543 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LCSSTAQA 8 LC TAQ+ Sbjct: 553 LCQDTAQS 560>NP_001092108 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 CSSTAQAK 9 CS TAQ + Sbjct: 293 CSDTAQER 300>NP_001035946 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LCSSTAQA 8 LC TAQ+ Sbjct: 553 LCQDTAQS 560>NP_001253976 Length = 264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LCSSTAQA 8 LC TAQ+ Sbjct: 203 LCQDTAQS 210>NP_001253975 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LCSSTAQA 8 LC TAQ+ Sbjct: 561 LCQDTAQS 568>XP_006720093 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LCSSTAQA 8 LC TAQ+ Sbjct: 553 LCQDTAQS 560>XP_006720092 Length = 622 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 LCSSTAQA 8 LC TAQ+ Sbjct: 561 LCQDTAQS 568>XP_005272378 Length = 1377 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CSSTAQ 7 CS+TAQ Sbjct: 762 CSATAQ 767>NP_038460 Length = 1378 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CSSTAQ 7 CS+TAQ Sbjct: 762 CSATAQ 767Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.104 0.282 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 488,939 Number of extensions: 456 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |