Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005148 18 1135 NP_009297 18 1135 NP_001271141 17 4312 NP_001271142 17 4312 NP_775083 17 4312 NP_001035905 17 4312 NP_001177371 17 4312 XP_006714775 17 4312 XP_006714774 17 4312 XP_006714773 17 4312 XP_006714772 17 4312 XP_006714771 17 4312 XP_006714770 17 4312 XP_006714769 17 4312 XP_006714768 17 4312 XP_006714767 17 4312 XP_006714766 17 4312 XP_006714765 17 4312 XP_006714764 17 4312 XP_006714763 17 4312 XP_006714762 17 4312 XP_006714761 17 4312 XP_006714760 17 4312 XP_006714759 17 4312 NP_001139 16 5631 XP_005259184 16 5631 XP_006714257 16 5631 XP_005263002 16 5631 XP_005262999 16 5631 XP_006714252 16 5631 XP_006714251 16 5631 XP_006714250 16 5631 NP_659491 16 5631 NP_000490 16 7355 NP_689914 16 7355 NP_006500 16 7355 XP_005259185 16 7355 XP_005254242 16 7355 NP_076985 15 9605>NP_005148 Length = 1130 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAISRSSEQ 9 LAISR+SEQ Sbjct: 1041 LAISRNSEQ 1049>NP_009297 Length = 1149 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAISRSSEQ 9 LAISR+SEQ Sbjct: 1060 LAISRNSEQ 1068>NP_001271141 Length = 666 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 42 AVSRSAEQ 49>NP_001271142 Length = 636 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 61 AVSRSAEQ 68>NP_775083 Length = 686 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 61 AVSRSAEQ 68>NP_001035905 Length = 750 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 125 AVSRSAEQ 132>NP_001177371 Length = 695 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 83 AVSRSAEQ 90>XP_006714775 Length = 654 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 42 AVSRSAEQ 49>XP_006714774 Length = 667 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 42 AVSRSAEQ 49>XP_006714773 Length = 673 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 61 AVSRSAEQ 68>XP_006714772 Length = 689 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 64 AVSRSAEQ 71>XP_006714771 Length = 695 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 83 AVSRSAEQ 90>XP_006714770 Length = 708 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 83 AVSRSAEQ 90>XP_006714769 Length = 735 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 110 AVSRSAEQ 117>XP_006714768 Length = 749 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 125 AVSRSAEQ 132>XP_006714767 Length = 754 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 129 AVSRSAEQ 136>XP_006714766 Length = 756 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 144 AVSRSAEQ 151>XP_006714765 Length = 757 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 132 AVSRSAEQ 139>XP_006714764 Length = 769 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 144 AVSRSAEQ 151>XP_006714763 Length = 772 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 147 AVSRSAEQ 154>XP_006714762 Length = 776 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 151 AVSRSAEQ 158>XP_006714761 Length = 778 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 166 AVSRSAEQ 173>XP_006714760 Length = 790 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 166 AVSRSAEQ 173>XP_006714759 Length = 791 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 A+SRS+EQ Sbjct: 166 AVSRSAEQ 173>NP_001139 Length = 3957 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1669 LAVGRSSEK 1677>XP_005259184 Length = 576 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LAISRSSE 8 LA+SRS+E Sbjct: 45 LAVSRSTE 52>XP_006714257 Length = 4145 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1678 LAVGRSSEK 1686>XP_005263002 Length = 4072 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1636 LAVGRSSEK 1644>XP_005262999 Length = 4147 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1680 LAVGRSSEK 1688>XP_006714252 Length = 4153 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1686 LAVGRSSEK 1694>XP_006714251 Length = 4165 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1698 LAVGRSSEK 1706>XP_006714250 Length = 4190 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+ RSSE+ Sbjct: 1723 LAVGRSSEK 1731>NP_659491 Length = 620 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 LAISRSSE 8 LAISRS E Sbjct: 70 LAISRSGE 77>NP_000490 Length = 512 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+SR S+Q Sbjct: 61 LALSRMSQQ 69>NP_689914 Length = 5058 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AISRSSEQ 9 AISR+SE+ Sbjct: 2481 AISRASEE 2488>NP_006500 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LAISRSSEQ 9 LA+SRS+++ Sbjct: 45 LAVSRSTDE 53>XP_005259185 Length = 507 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 LAISRSSEQ 9 LA+SRS+++ Sbjct: 45 LAVSRSTDE 53>XP_005254242 Length = 512 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LAISRSSEQ 9 LA+SR S+Q Sbjct: 61 LALSRMSQQ 69>NP_076985 Length = 1104 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ISRSSEQ 9 ISRSSE+ Sbjct: 201 ISRSSEE 207Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.297 0.108 0.226 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 248,217 Number of extensions: 254 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |