Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_056045 16 5631 NP_001269166 16 5631 NP_001269167 16 5631 NP_075049 16 5631 NP_612808 16 5631 XP_005262699 16 5631 XP_005262697 16 5631 XP_006714054 16 5631 XP_005262695 16 5631 NP_005888 16 7355 NP_006705 16 7355 NP_001138821 16 7355 XP_005266856 16 7355 XP_005266855 16 7355 XP_006710686 16 7355 XP_005270897 16 7355 XP_005270896 16 7355 XP_006710685 16 7355 NP_001139669 16 7355 NP_006682 15 9605 NP_036582 15 9605 XP_005250318 15 9605>NP_056045 Length = 1704 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 KSGLG+ + Sbjct: 622 KSGLGITI 629>NP_001269166 Length = 893 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SGLGVMV 8 SGLG+MV Sbjct: 41 SGLGLMV 47>NP_001269167 Length = 822 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SGLGVMV 8 SGLG+MV Sbjct: 41 SGLGLMV 47>NP_075049 Length = 823 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SGLGVMV 8 SGLG+MV Sbjct: 42 SGLGLMV 48>NP_612808 Length = 894 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 SGLGVMV 8 SGLG+MV Sbjct: 42 SGLGLMV 48>XP_005262699 Length = 1005 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 KSGLG+ + Sbjct: 622 KSGLGITI 629>XP_005262697 Length = 1681 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 KSGLG+ + Sbjct: 622 KSGLGITI 629>XP_006714054 Length = 1693 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 KSGLG+ + Sbjct: 611 KSGLGITI 618>XP_005262695 Length = 1704 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 KSGLG+ + Sbjct: 622 KSGLGITI 629>NP_005888 Length = 584 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 +SGLGV V Sbjct: 333 RSGLGVTV 340>NP_006705 Length = 453 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSGLGVMVA 9 +SGLG+ VA Sbjct: 18 RSGLGLPVA 26>NP_001138821 Length = 582 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 +SGLGV V Sbjct: 333 RSGLGVTV 340>XP_005266856 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSGLGVMVA 9 +SGLG+ VA Sbjct: 18 RSGLGLPVA 26>XP_005266855 Length = 364 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSGLGVMVA 9 +SGLG+ VA Sbjct: 18 RSGLGLPVA 26>XP_006710686 Length = 440 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 +SGLGV V Sbjct: 333 RSGLGVTV 340>XP_005270897 Length = 465 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 +SGLGV V Sbjct: 333 RSGLGVTV 340>XP_005270896 Length = 465 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 +SGLGV V Sbjct: 333 RSGLGVTV 340>XP_006710685 Length = 538 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 +SGLGV V Sbjct: 333 RSGLGVTV 340>NP_001139669 Length = 7081 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSGLGVMVA 9 KSG GVM++ Sbjct: 5194 KSGPGVMLS 5202>NP_006682 Length = 322 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KSGLGVMV 8 K+G+GV++ Sbjct: 108 KNGVGVLI 115>NP_036582 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 K+GLGV V Sbjct: 583 KAGLGVNV 590>XP_005250318 Length = 627 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGLGVMV 8 K+GLGV V Sbjct: 584 KAGLGVNV 591Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.134 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 472,718 Number of extensions: 631 Number of successful extensions: 22 Number of sequences better than 10000.0: 22 Number of HSP's gapped: 22 Number of HSP's successfully gapped: 22 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |