Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 390 NP_671714 20 390 XP_006715890 20 390 XP_005250160 20 390 XP_005250159 20 390 NP_005752 16 5631 NP_055573 16 5631 NP_001091981 16 5631 NP_001230881 16 5631 NP_004511 16 5631 NP_001230882 16 5631 XP_006726466 16 5631 XP_006719249 16 5631 XP_005271606 16 5631 XP_005271605 16 5631 XP_005271603 16 5631 XP_005271602 16 5631 XP_006712969 16 5631 XP_006710208 16 5631 NP_219479 16 7355 NP_060719 15 9605 NP_001258968 15 9605 NP_116056 15 9605 NP_001124174 15 9605 NP_001116427 15 9605 NP_001011649 15 9605 XP_006717248 15 9605 XP_006717247 15 9605 XP_006717246 15 9605 XP_006717245 15 9605 XP_006717244 15 9605 XP_006717243 15 9605 XP_006717242 15 9605 NP_001156386 15 9605>NP_005742 Length = 3907 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQSQMLEM+ Sbjct: 3129 KQSQMLEMQ 3137>NP_671714 Length = 3899 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQSQMLEM+ Sbjct: 3121 KQSQMLEMQ 3129>XP_006715890 Length = 3860 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQSQMLEM+ Sbjct: 3082 KQSQMLEMQ 3090>XP_005250160 Length = 3939 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQSQMLEM+ Sbjct: 3161 KQSQMLEMQ 3169>XP_005250159 Length = 3952 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQSQMLEM+ Sbjct: 3174 KQSQMLEMQ 3182>NP_005752 Length = 1568 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KQSQMLEM 8 KQSQ LE+ Sbjct: 976 KQSQQLEL 983>NP_055573 Length = 992 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQ+++LEM+ Sbjct: 770 KQTKLLEMQ 778>NP_001091981 Length = 744 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SQMLEME 9 SQM+EME Sbjct: 653 SQMVEME 659>NP_001230881 Length = 686 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SQMLEME 9 SQM+EME Sbjct: 595 SQMVEME 601>NP_004511 Length = 706 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SQMLEME 9 SQM+EME Sbjct: 615 SQMVEME 621>NP_001230882 Length = 687 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SQMLEME 9 SQM+EME Sbjct: 596 SQMVEME 602>XP_006726466 Length = 1310 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QSQMLEME 9 Q+QM EME Sbjct: 1222 QAQMTEME 1229>XP_006719249 Length = 1555 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KQSQMLEM 8 KQSQ LE+ Sbjct: 976 KQSQQLEL 983>XP_005271606 Length = 372 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQ+++LEM+ Sbjct: 150 KQTKLLEMQ 158>XP_005271605 Length = 417 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQ+++LEM+ Sbjct: 195 KQTKLLEMQ 203>XP_005271603 Length = 907 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQ+++LEM+ Sbjct: 770 KQTKLLEMQ 778>XP_005271602 Length = 915 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSQMLEME 9 KQ+++LEM+ Sbjct: 770 KQTKLLEMQ 778>XP_006712969 Length = 1310 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QSQMLEME 9 Q+QM EME Sbjct: 1222 QAQMTEME 1229>XP_006710208 Length = 666 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QSQMLEME 9 Q+QM EME Sbjct: 578 QAQMTEME 585>NP_219479 Length = 292 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 QSQMLEME 9 Q Q+LEME Sbjct: 10 QLQLLEME 17>NP_060719 Length = 1893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 965 QSQILELQ 972>NP_001258968 Length = 1663 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 735 QSQILELQ 742>NP_116056 Length = 398 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSQMLEME 9 +Q Q+LE+E Sbjct: 174 EQKQLLEVE 182>NP_001124174 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSQMLEME 9 +Q Q+LE+E Sbjct: 174 EQKQLLEVE 182>NP_001116427 Length = 462 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSQMLEME 9 +Q Q+LE+E Sbjct: 238 EQKQLLEVE 246>NP_001011649 Length = 1814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 965 QSQILELQ 972>XP_006717248 Length = 1664 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 736 QSQILELQ 743>XP_006717247 Length = 1670 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 736 QSQILELQ 743>XP_006717246 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 965 QSQILELQ 972>XP_006717245 Length = 1861 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 933 QSQILELQ 940>XP_006717244 Length = 1867 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 933 QSQILELQ 940>XP_006717243 Length = 1889 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 955 QSQILELQ 962>XP_006717242 Length = 1898 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 QSQ+LE++ Sbjct: 964 QSQILELQ 971>NP_001156386 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 QSQMLEME 9 ++Q+LEME Sbjct: 124 RAQLLEME 131Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.109 0.238 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 391,888 Number of extensions: 756 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |