Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_006715                                                              18    1482
NP_005913                                                              18    1482
XP_005267046                                                           18    1482
XP_005267045                                                           18    1482
NP_002464                                                              16    5631
NP_008877                                                              16    7355
XP_005274250                                                           16    7355
XP_006718734                                                           16    7355
XP_006718733                                                           16    7355
XP_005274249                                                           16    7355
XP_006718732                                                           16    7355
NP_008986                                                              15    9605
NP_004951                                                              15    9605
NP_001164408                                                           15    9605
NP_001164105                                                           15    9605
NP_001192244                                                           15    9605
NP_078912                                                              15    9605
NP_001092759                                                           15    9605
NP_006651                                                              15    9605
NP_631961                                                              15    9605
NP_849155                                                              15    9605
XP_005255290                                                           15    9605
XP_006717660                                                           15    9605
XP_005262815                                                           15    9605
XP_006714148                                                           15    9605
XP_006714147                                                           15    9605
NP_003478                                                              15    9605
>NP_006715
          Length = 1558

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           KQMGL KLI
Sbjct: 535 KQMGLRKLI 543
>NP_005913
          Length = 1608

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           KQMGL KLI
Sbjct: 535 KQMGLRKLI 543
>XP_005267046
          Length = 1554

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           KQMGL KLI
Sbjct: 535 KQMGLRKLI 543
>XP_005267045
          Length = 1604

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           KQMGL KLI
Sbjct: 535 KQMGLRKLI 543
>NP_002464
          Length = 1960

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1   KQMGLIKLI 9
           +QMGL+++I
Sbjct: 335 EQMGLLRVI 343
>NP_008877
          Length = 2390

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K++GL KL+
Sbjct: 246 KELGLTKLL 254
>XP_005274250
          Length = 2390

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K++GL KL+
Sbjct: 246 KELGLTKLL 254
>XP_006718734
          Length = 2390

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K++GL KL+
Sbjct: 246 KELGLTKLL 254
>XP_006718733
          Length = 2390

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K++GL KL+
Sbjct: 246 KELGLTKLL 254
>XP_005274249
          Length = 2390

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K++GL KL+
Sbjct: 246 KELGLTKLL 254
>XP_006718732
          Length = 2397

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K++GL KL+
Sbjct: 253 KELGLTKLL 261
>NP_008986
          Length = 1390

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K+ GL+K+I
Sbjct: 167 KKCGLLKII 175
>NP_004951
          Length = 526

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   KQMGLIK 7
           KQ+G+IK
Sbjct: 306 KQIGIIK 312
>NP_001164408
          Length = 522

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   KQMGLIK 7
           KQ+G+IK
Sbjct: 302 KQIGIIK 308
>NP_001164105
          Length = 525

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   KQMGLIK 7
           KQ+G+IK
Sbjct: 305 KQIGIIK 311
>NP_001192244
          Length = 459

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KQMGLIKL 8
           KQ+GL+ L
Sbjct: 291 KQLGLVAL 298
>NP_078912
          Length = 459

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KQMGLIKL 8
           KQ+GL+ L
Sbjct: 291 KQLGLVAL 298
>NP_001092759
          Length = 882

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K+ GL+KL+
Sbjct: 719 KKSGLLKLL 727
>NP_006651
          Length = 633

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 2   QMGLIKLI 9
           Q GL+KL+
Sbjct: 381 QQGLLKLL 388
>NP_631961
          Length = 592

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   KQMGLIK 7
           KQ+G+IK
Sbjct: 255 KQIGIIK 261
>NP_849155
          Length = 537

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KQMGLIKL 8
           K +GLIKL
Sbjct: 130 KLLGLIKL 137
>XP_005255290
          Length = 321

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   KQMGLIK 7
           KQ+G+IK
Sbjct: 101 KQIGIIK 107
>XP_006717660
          Length = 1369

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KQMGLIKLI 9
           K+ GL+K+I
Sbjct: 146 KKCGLLKII 154
>XP_005262815
          Length = 474

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KQMGLIKL 8
           K +GLIKL
Sbjct: 130 KLLGLIKL 137
>XP_006714148
          Length = 537

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KQMGLIKL 8
           K +GLIKL
Sbjct: 130 KLLGLIKL 137
>XP_006714147
          Length = 537

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KQMGLIKL 8
           K +GLIKL
Sbjct: 130 KLLGLIKL 137
>NP_003478
          Length = 589

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1   KQMGLIK 7
           KQ+G+IK
Sbjct: 252 KQIGIIK 258
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.333    0.153    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 426,157
Number of extensions: 680
Number of successful extensions: 27
Number of sequences better than 10000.0: 27
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 27
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (16.2 bits)
S2: 28 (15.4 bits)

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