Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 21 229 NP_444254 21 229 NP_444253 21 229 NP_444255 21 229 XP_005247551 21 229 XP_005247550 21 229 XP_006713712 21 229 XP_005247549 21 229 NP_000095 17 4312 NP_001073594 17 4312 XP_005246952 17 4312 XP_006712855 17 4312 XP_005246950 17 4312 XP_006712854 17 4312 XP_005246942 17 4312 NP_065689 16 5631 NP_001139313 16 5631 NP_001139301 16 5631 NP_003273 16 5631 NP_003272 16 5631 NP_001008844 15 9605 NP_004406 15 9605 NP_067047 15 9605 NP_001166217 15 9605 NP_001166216 15 9605 NP_006355 15 9605 NP_116780 15 9605 XP_005267319 15 9605 XP_006717280 15 9605 XP_006717279 15 9605 XP_006717278 15 9605 XP_006717277 15 9605 XP_006717276 15 9605 XP_006717275 15 9605 XP_006717274 15 9605 XP_006717273 15 9605 XP_006717272 15 9605 NP_001177694 15 9605 NP_006354 15 9605 NP_116781 15 9605>NP_444256 Length = 1794 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 852 EQMDFRANL 860>NP_444254 Length = 1845 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 852 EQMDFRANL 860>NP_444253 Length = 1914 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 921 EQMDFRANL 929>NP_444255 Length = 1863 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 921 EQMDFRANL 929>XP_005247551 Length = 1855 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 862 EQMDFRANL 870>XP_005247550 Length = 1856 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 931 EQMDFRANL 939>XP_006713712 Length = 1923 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 931 EQMDFRANL 939>XP_005247549 Length = 1924 Score = 20.8 bits (42), Expect = 229 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQMDFRANL 9 +QMDFRANL Sbjct: 931 EQMDFRANL 939>NP_000095 Length = 543 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 QMDFRAN 8 Q DFRAN Sbjct: 490 QCDFRAN 496>NP_001073594 Length = 538 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF NL Sbjct: 58 KKMDFSRNL 66>XP_005246952 Length = 279 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF NL Sbjct: 58 KKMDFSRNL 66>XP_006712855 Length = 294 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF NL Sbjct: 58 KKMDFSRNL 66>XP_005246950 Length = 294 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF NL Sbjct: 58 KKMDFSRNL 66>XP_006712854 Length = 454 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF NL Sbjct: 58 KKMDFSRNL 66>XP_005246942 Length = 523 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF NL Sbjct: 58 KKMDFSRNL 66>NP_065689 Length = 251 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 MDFRANL 9 MDFR N+ Sbjct: 96 MDFRGNI 102>NP_001139313 Length = 182 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MDFRANL 9 MD RANL Sbjct: 135 MDLRANL 141>NP_001139301 Length = 182 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MDFRANL 9 MD RANL Sbjct: 135 MDLRANL 141>NP_003273 Length = 182 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MDFRANL 9 MD RANL Sbjct: 135 MDLRANL 141>NP_003272 Length = 187 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 MDFRANL 9 MD RANL Sbjct: 136 MDLRANL 142>NP_001008844 Length = 2272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KQMDFR 6 KQ+DFR Sbjct: 872 KQIDFR 877>NP_004406 Length = 2871 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KQMDFR 6 KQ+DFR Sbjct: 872 KQIDFR 877>NP_067047 Length = 2506 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>NP_001166217 Length = 749 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82>NP_001166216 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82>NP_006355 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82>NP_116780 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82>XP_005267319 Length = 789 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82>XP_006717280 Length = 2221 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717279 Length = 2506 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717278 Length = 2566 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717277 Length = 2567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717276 Length = 2567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717275 Length = 2567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717274 Length = 2567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717273 Length = 2567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>XP_006717272 Length = 2567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KQMDFRAN 8 K DF+AN Sbjct: 1215 KHRDFKAN 1222>NP_001177694 Length = 207 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KQMDFRANL 9 K+MDF N+ Sbjct: 58 KKMDFSQNV 66>NP_006354 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82>NP_116781 Length = 767 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 QMDFRANL 9 Q+D+RA L Sbjct: 75 QVDYRAKL 82Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 414,998 Number of extensions: 446 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |