Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_005742                                                              20     390
NP_671714                                                              20     390
XP_006715890                                                           20     390
XP_005250160                                                           20     390
XP_005250159                                                           20     390
NP_001131140                                                           17    2528
NP_036247                                                              17    2528
NP_001131139                                                           17    2528
NP_055073                                                              17    3301
XP_006723744                                                           17    3301
XP_005260304                                                           17    3301
NP_116584                                                              17    4312
NP_004750                                                              17    4312
NP_001185780                                                           17    4312
NP_001185779                                                           17    4312
NP_001185781                                                           17    4312
NP_055762                                                              17    4312
NP_006124                                                              17    4312
NP_057168                                                              17    4312
XP_005274287                                                           17    4312
XP_005273410                                                           17    4312
XP_006710522                                                           17    4312
XP_006710521                                                           17    4312
XP_005270689                                                           17    4312
NP_001239264                                                           16    5631
NP_055497                                                              16    5631
NP_116255                                                              16    5631
XP_005254784                                                           16    5631
XP_005254783                                                           16    5631
XP_006716552                                                           16    5631
XP_006716551                                                           16    5631
XP_006716550                                                           16    5631
XP_006720035                                                           16    7355
XP_005268376                                                           16    7355
XP_006720034                                                           16    7355
XP_006720033                                                           16    7355
XP_005268375                                                           16    7355
XP_006720032                                                           16    7355
NP_060375                                                              16    7355
NP_000288                                                              15    9605
NP_740754                                                              15    9605
NP_061336                                                              15    9605
NP_997242                                                              15    9605
NP_008971                                                              15    9605
NP_004362                                                              15    9605
NP_001091868                                                           15    9605
NP_954983                                                              15    9605
NP_653333                                                              15    9605
XP_005258523                                                           15    9605
XP_005258522                                                           15    9605
XP_005258520                                                           15    9605
XP_005258521                                                           15    9605
XP_005258519                                                           15    9605
XP_005258518                                                           15    9605
XP_005258516                                                           15    9605
XP_006719872                                                           15    9605
XP_006719871                                                           15    9605
XP_006719870                                                           15    9605
>NP_005742
          Length = 3907

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KKNAVLDRM 9
           +KNAVLDRM
Sbjct: 606 EKNAVLDRM 614
>NP_671714
          Length = 3899

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KKNAVLDRM 9
           +KNAVLDRM
Sbjct: 606 EKNAVLDRM 614
>XP_006715890
          Length = 3860

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KKNAVLDRM 9
           +KNAVLDRM
Sbjct: 606 EKNAVLDRM 614
>XP_005250160
          Length = 3939

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KKNAVLDRM 9
           +KNAVLDRM
Sbjct: 606 EKNAVLDRM 614
>XP_005250159
          Length = 3952

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KKNAVLDRM 9
           +KNAVLDRM
Sbjct: 606 EKNAVLDRM 614
>NP_001131140
          Length = 1982

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    KKNAVLDRM 9
            KKN ++DR+
Sbjct: 1111 KKNGIVDRL 1119
>NP_036247
          Length = 1982

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    KKNAVLDRM 9
            KKN ++DR+
Sbjct: 1111 KKNGIVDRL 1119
>NP_001131139
          Length = 1982

 Score = 17.3 bits (33), Expect =  2528
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1    KKNAVLDRM 9
            KKN ++DR+
Sbjct: 1111 KKNGIVDRL 1119
>NP_055073
          Length = 1530

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KKNAVLDRM 9
           K NA+LD+M
Sbjct: 175 KMNAMLDKM 183
>XP_006723744
          Length = 847

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KKNAVLDRM 9
           K NA+LD+M
Sbjct: 175 KMNAMLDKM 183
>XP_005260304
          Length = 1530

 Score = 16.9 bits (32), Expect =  3301
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KKNAVLDRM 9
           K NA+LD+M
Sbjct: 175 KMNAMLDKM 183
>NP_116584
          Length = 400

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA++D
Sbjct: 55 KKNAIID 61
>NP_004750
          Length = 370

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA++D
Sbjct: 55 KKNAIID 61
>NP_001185780
          Length = 622

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 55 KKNALLD 61
>NP_001185779
          Length = 622

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 55 KKNALLD 61
>NP_001185781
          Length = 588

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 55 KKNALLD 61
>NP_055762
          Length = 622

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 55 KKNALLD 61
>NP_006124
          Length = 1042

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   KKNAVLD 7
           K+NAVLD
Sbjct: 250 KRNAVLD 256
>NP_057168
          Length = 281

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KKNAVLDRM 9
           KKN+ LD+M
Sbjct: 179 KKNSSLDQM 187
>XP_005274287
          Length = 1042

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   KKNAVLD 7
           K+NAVLD
Sbjct: 250 KRNAVLD 256
>XP_005273410
          Length = 371

 Score = 16.5 bits (31), Expect =  4312
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA++D
Sbjct: 55 KKNAIID 61
>XP_006710522
          Length = 596

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 63 KKNALLD 69
>XP_006710521
          Length = 607

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 40 KKNALLD 46
>XP_005270689
          Length = 630

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KKNAVLD 7
          KKNA+LD
Sbjct: 63 KKNALLD 69
>NP_001239264
          Length = 1302

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   KNAVLDR 8
           KN VLDR
Sbjct: 126 KNGVLDR 132
>NP_055497
          Length = 1047

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           KKN +LD+
Sbjct: 619 KKNRILDK 626
>NP_116255
          Length = 1302

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   KNAVLDR 8
           KN VLDR
Sbjct: 126 KNGVLDR 132
>XP_005254784
          Length = 1303

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   KNAVLDR 8
           KN VLDR
Sbjct: 126 KNGVLDR 132
>XP_005254783
          Length = 1303

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 2   KNAVLDR 8
           KN VLDR
Sbjct: 126 KNGVLDR 132
>XP_006716552
          Length = 1038

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           KKN +LD+
Sbjct: 619 KKNRILDK 626
>XP_006716551
          Length = 1047

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           KKN +LD+
Sbjct: 619 KKNRILDK 626
>XP_006716550
          Length = 1047

 Score = 16.2 bits (30), Expect =  5631
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           KKN +LD+
Sbjct: 619 KKNRILDK 626
>XP_006720035
          Length = 411

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>XP_005268376
          Length = 543

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>XP_006720034
          Length = 613

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>XP_006720033
          Length = 646

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>XP_005268375
          Length = 655

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>XP_006720032
          Length = 677

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>NP_060375
          Length = 677

 Score = 15.8 bits (29), Expect =  7355
 Identities = 5/9 (55%), Positives = 9/9 (100%)

Query: 1  KKNAVLDRM 9
          +KNAVL+++
Sbjct: 63 QKNAVLNKL 71
>NP_000288
          Length = 968

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 1   KKNAVLDR 8
           KKN  LDR
Sbjct: 410 KKNVWLDR 417
>NP_740754
          Length = 570

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   KNAVLDRM 9
           +NAVLD++
Sbjct: 269 ENAVLDQL 276
>NP_061336
          Length = 570

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   KNAVLDRM 9
           +NAVLD++
Sbjct: 269 ENAVLDQL 276
>NP_997242
          Length = 521

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1  KKNAVL 6
          KKNAVL
Sbjct: 24 KKNAVL 29
>NP_008971
          Length = 856

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 456 NAIMDKM 462
>NP_004362
          Length = 1224

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 4   AVLDRM 9
           AVLDRM
Sbjct: 427 AVLDRM 432
>NP_001091868
          Length = 1233

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 4   AVLDRM 9
           AVLDRM
Sbjct: 427 AVLDRM 432
>NP_954983
          Length = 708

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           K+NA+L R
Sbjct: 321 KRNAILHR 328
>NP_653333
          Length = 756

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 356 NAIMDKM 362
>XP_005258523
          Length = 756

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 356 NAIMDKM 362
>XP_005258522
          Length = 766

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 356 NAIMDKM 362
>XP_005258520
          Length = 766

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 356 NAIMDKM 362
>XP_005258521
          Length = 766

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 356 NAIMDKM 362
>XP_005258519
          Length = 767

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 367 NAIMDKM 373
>XP_005258518
          Length = 777

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 367 NAIMDKM 373
>XP_005258516
          Length = 866

 Score = 15.4 bits (28), Expect =  9605
 Identities = 4/7 (57%), Positives = 7/7 (100%)

Query: 3   NAVLDRM 9
           NA++D+M
Sbjct: 456 NAIMDKM 462
>XP_006719872
          Length = 402

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           K+NA+L R
Sbjct: 321 KRNAILHR 328
>XP_006719871
          Length = 526

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           K+NA+L R
Sbjct: 321 KRNAILHR 328
>XP_006719870
          Length = 683

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 1   KKNAVLDR 8
           K+NA+L R
Sbjct: 321 KRNAILHR 328
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.320    0.129    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 431,066
Number of extensions: 635
Number of successful extensions: 58
Number of sequences better than 10000.0: 58
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 58
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.9 bits)
S2: 28 (15.4 bits)

CANCERTOPE    |     Raghava's Group    |     IMTECH    |     CSIR    |     CRDD    |     GPSR Package