Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 19 665 NP_001245200 19 665 NP_001161091 19 665 NP_000240 19 665 NP_001161090 19 665 NP_001161089 19 665 NP_001245203 19 665 XP_005265223 19 665 XP_005265221 19 665 XP_005265220 19 665 XP_005265218 19 665 NP_742066 16 5631 NP_006355 16 5631 XP_005267319 16 5631 XP_005248231 16 5631 XP_005264197 16 5631 XP_006712004 16 5631 NP_060793 16 5631 XP_005265877 16 7355 NP_001180360 15 9605 NP_057051 15 9605 NP_036543 15 9605 NP_001376 15 9605 NP_006368 15 9605 NP_006460 15 9605 NP_001269266 15 9605 NP_001269267 15 9605 NP_001074003 15 9605 NP_001073890 15 9605 NP_001165806 15 9605 NP_775871 15 9605 NP_001129497 15 9605 NP_005023 15 9605 XP_006722755 15 9605 XP_005254452 15 9605 XP_005254451 15 9605 XP_006716779 15 9605 XP_005244900 15 9605 XP_005270795 15 9605>NP_001245202 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 212 KGTSEMSEK 220>NP_001245200 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 453 KGTSEMSEK 461>NP_001161091 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 212 KGTSEMSEK 220>NP_000240 Length = 756 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 453 KGTSEMSEK 461>NP_001161090 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 212 KGTSEMSEK 220>NP_001161089 Length = 658 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 355 KGTSEMSEK 363>NP_001245203 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 212 KGTSEMSEK 220>XP_005265223 Length = 415 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 112 KGTSEMSEK 120>XP_005265221 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 212 KGTSEMSEK 220>XP_005265220 Length = 515 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 212 KGTSEMSEK 220>XP_005265218 Length = 687 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 KGTSEMS K Sbjct: 384 KGTSEMSEK 392>NP_742066 Length = 1493 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KGTSEMSAK 9 KG SE+S K Sbjct: 369 KGNSELSKK 377>NP_006355 Length = 765 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 +GT ++SAK Sbjct: 190 RGTKDLSAK 198>XP_005267319 Length = 789 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KGTSEMSAK 9 +GT ++SAK Sbjct: 190 RGTKDLSAK 198>XP_005248231 Length = 476 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTSEMSA 8 GTSEM+A Sbjct: 93 GTSEMNA 99>XP_005264197 Length = 786 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KGTSEMSAK 9 KG SE+S K Sbjct: 369 KGNSELSKK 377>XP_006712004 Length = 1488 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KGTSEMSAK 9 KG SE+S K Sbjct: 364 KGNSELSKK 372>NP_060793 Length = 481 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 GTSEMSA 8 GTSEM+A Sbjct: 93 GTSEMNA 99>XP_005265877 Length = 286 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KGTSEMSA 8 KG EMSA Sbjct: 8 KGVDEMSA 15>NP_001180360 Length = 779 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSEMSAK 9 TSE+SAK Sbjct: 358 TSEISAK 364>NP_057051 Length = 807 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSEMSAK 9 TSE+SAK Sbjct: 358 TSEISAK 364>NP_036543 Length = 752 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSEMSAK 9 TSE+SAK Sbjct: 303 TSEISAK 309>NP_001376 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KGTSEMSAK 9 KGT +SAK Sbjct: 409 KGTRTISAK 417>NP_006368 Length = 1591 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 594 GTSKWSAK 601>NP_006460 Length = 642 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GT+EM+ K Sbjct: 362 GTAEMNGK 369>NP_001269266 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GTSEMSAK 9 GTSE+S++ Sbjct: 86 GTSELSSE 93>NP_001269267 Length = 585 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GTSEMSAK 9 GTSE+S++ Sbjct: 63 GTSELSSE 70>NP_001074003 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 1214 GTSKWSAK 1221>NP_001073890 Length = 1703 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 670 GTSKWSAK 677>NP_001165806 Length = 603 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GTSEMSAK 9 GTSE+S++ Sbjct: 81 GTSELSSE 88>NP_775871 Length = 8384 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GTSEMSAK 9 GT+E+SA+ Sbjct: 5431 GTTELSAE 5438>NP_001129497 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GTSEMSAK 9 GTSE+S++ Sbjct: 108 GTSELSSE 115>NP_005023 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 GTSEMSAK 9 GTSE+S++ Sbjct: 108 GTSELSSE 115>XP_006722755 Length = 1722 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 670 GTSKWSAK 677>XP_005254452 Length = 2188 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 1214 GTSKWSAK 1221>XP_005254451 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 1214 GTSKWSAK 1221>XP_006716779 Length = 2399 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GTS+ SAK Sbjct: 1402 GTSKWSAK 1409>XP_005244900 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 GTSEMSAK 9 GT+EM+ K Sbjct: 144 GTAEMNGK 151>XP_005270795 Length = 783 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TSEMSAK 9 TSE+SAK Sbjct: 334 TSEISAK 340Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.283 0.0976 0.223 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 372,534 Number of extensions: 307 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 18 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |