Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001238830 17 3301 NP_001035370 17 3301 NP_000360 17 3301 NP_001157849 17 3301 XP_005268094 17 3301 NP_004224 17 3301 NP_001129047 16 5631 NP_060051 16 5631 NP_061722 16 7355 NP_115655 16 7355 NP_001248770 16 7355 XP_005261433 16 7355 XP_005255642 16 7355 XP_005247886 16 7355 XP_006713849 16 7355 NP_001098718 16 7355 NP_079056 16 7355 NP_114089 16 7355 NP_004358 15 9605 NP_113597 15 9605 NP_001231875 15 9605 NP_076406 15 9605 NP_001004479 15 9605>NP_001238830 Length = 146 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 ++F LTLII Sbjct: 93 VIFYLTLII 101>NP_001035370 Length = 204 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 ++F LTLII Sbjct: 152 VIFYLTLII 160>NP_000360 Length = 764 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 IVFVLTL I Sbjct: 583 IVFVLTLNI 591>NP_001157849 Length = 289 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 +VF LTLI+ Sbjct: 14 VVFYLTLIV 22>XP_005268094 Length = 764 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 IVFVLTL I Sbjct: 583 IVFVLTLNI 591>NP_004224 Length = 205 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 ++F LTLII Sbjct: 152 VIFYLTLII 160>NP_001129047 Length = 91 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 +VFV TL+I Sbjct: 10 LVFVATLLI 18>NP_060051 Length = 479 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IVFVLTLII 9 +VFV+T++I Sbjct: 466 MVFVMTILI 474>NP_061722 Length = 1007 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VFVLTLII 9 +F+LT+II Sbjct: 718 IFLLTIII 725>NP_115655 Length = 1196 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VFVLTLII 9 +FVL LII Sbjct: 1071 IFVLVLII 1078>NP_001248770 Length = 1006 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FVLTLII 9 F+LTLI+ Sbjct: 909 FILTLIV 915>XP_005261433 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 IVFVLTLI 8 +VF+LTL+ Sbjct: 7 VVFLLTLL 14>XP_005255642 Length = 647 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FVLTLII 9 F+LTLI+ Sbjct: 550 FILTLIV 556>XP_005247886 Length = 1127 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VFVLTLII 9 +FVL LII Sbjct: 1071 IFVLVLII 1078>XP_006713849 Length = 1147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VFVLTLII 9 +FVL LII Sbjct: 1022 IFVLVLII 1029>NP_001098718 Length = 1006 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FVLTLII 9 F+LTLI+ Sbjct: 909 FILTLIV 915>NP_079056 Length = 760 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 FVLTLII 9 F+LTLI+ Sbjct: 663 FILTLIV 669>NP_114089 Length = 884 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VFVLTLII 9 +F+LT+II Sbjct: 718 IFLLTIII 725>NP_004358 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 IVFVLTL 7 I+FVLTL Sbjct: 93 ILFVLTL 99>NP_113597 Length = 374 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 IVFVLTL 7 I+FVLTL Sbjct: 93 ILFVLTL 99>NP_001231875 Length = 419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VFVLTLII 9 VF+LTL++ Sbjct: 412 VFLLTLLL 419>NP_076406 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVFVLTLII 9 I+F+L LI+ Sbjct: 235 IIFLLLLIV 243>NP_001004479 Length = 324 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 IVFVLTLI 8 +++VLTL+ Sbjct: 43 VIYVLTLL 50Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.362 0.179 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 315,132 Number of extensions: 551 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (17.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |