Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 18 1935 NP_004439 18 1935 NP_001276865 18 1935 NP_001005862 18 1935 XP_005257197 18 1935 XP_006721828 18 1935 NP_000254 17 2528 NP_899200 16 5631 XP_005247134 16 5631 NP_005290 16 7355 NP_666018 16 7355 NP_001138135 15 9605 NP_004054 15 9605 NP_001296 15 9605 NP_060575 15 9605>NP_001276866 Length = 1055 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ISA VGILL Sbjct: 655 ISAVVGILL 663>NP_004439 Length = 1255 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ISA VGILL Sbjct: 655 ISAVVGILL 663>NP_001276865 Length = 1240 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ISA VGILL Sbjct: 640 ISAVVGILL 648>NP_001005862 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ISA VGILL Sbjct: 625 ISAVVGILL 633>XP_005257197 Length = 1225 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ISA VGILL Sbjct: 625 ISAVVGILL 633>XP_006721828 Length = 1336 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ISA VGILL Sbjct: 736 ISAVVGILL 744>NP_000254 Length = 743 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 ISAAVGILL 9 ++AAVG+LL Sbjct: 6 VAAAVGVLL 14>NP_899200 Length = 1261 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ISAAVGILL 9 ++AAVG++L Sbjct: 274 LAAAVGVIL 282>XP_005247134 Length = 1286 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ISAAVGILL 9 ++AAVG++L Sbjct: 274 LAAAVGVIL 282>NP_005290 Length = 319 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 ++ AVG+LL Sbjct: 13 VATAVGVLL 21>NP_666018 Length = 610 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 ISAAVGI 7 ISAA+GI Sbjct: 24 ISAAIGI 30>NP_001138135 Length = 832 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ISAAVGILL 9 + AVGILL Sbjct: 785 VGMAVGILL 793>NP_004054 Length = 832 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ISAAVGILL 9 + AVGILL Sbjct: 785 VGMAVGILL 793>NP_001296 Length = 209 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 I AA+G+LL Sbjct: 89 IVAALGVLL 97>NP_060575 Length = 213 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 ISAAVGILL 9 + AA+G+L+ Sbjct: 112 VDAAIGLLM 120Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.147 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 333,934 Number of extensions: 294 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |