Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 509 NP_671714 20 509 XP_006715890 20 509 XP_005250160 20 509 XP_005250159 20 509 NP_001254500 17 2528 NP_001254501 17 2528 NP_060891 17 2528 NP_573444 17 4312 NP_078802 17 4312 NP_620641 17 4312 XP_006710957 17 4312 NP_001265371 15 9605 NP_004508 15 9605 NP_001014795 15 9605 NP_001014794 15 9605 NP_001265370 15 9605 NP_057937 15 9605 NP_057941 15 9605 NP_057936 15 9605 NP_000793 15 9605 XP_005252962 15 9605 XP_005252961 15 9605>NP_005742 Length = 3907 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IKLMNVAMN 9 IKLMNVA+N Sbjct: 488 IKLMNVAIN 496>NP_671714 Length = 3899 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IKLMNVAMN 9 IKLMNVA+N Sbjct: 488 IKLMNVAIN 496>XP_006715890 Length = 3860 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IKLMNVAMN 9 IKLMNVA+N Sbjct: 488 IKLMNVAIN 496>XP_005250160 Length = 3939 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IKLMNVAMN 9 IKLMNVA+N Sbjct: 488 IKLMNVAIN 496>XP_005250159 Length = 3952 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IKLMNVAMN 9 IKLMNVA+N Sbjct: 488 IKLMNVAIN 496>NP_001254500 Length = 928 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 KLMN+A N Sbjct: 861 KLMNIAFN 868>NP_001254501 Length = 468 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 KLMN+A N Sbjct: 401 KLMNIAFN 408>NP_060891 Length = 917 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 KLMN+A N Sbjct: 850 KLMNIAFN 857>NP_573444 Length = 593 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IKLMNVAMN 9 I+ MNVA+N Sbjct: 96 IQAMNVALN 104>NP_078802 Length = 563 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IKLMNVAMN 9 I+ MNVA+N Sbjct: 96 IQAMNVALN 104>NP_620641 Length = 594 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IKLMNVAMN 9 I+ MNVA+N Sbjct: 96 IQAMNVALN 104>XP_006710957 Length = 564 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IKLMNVAMN 9 I+ MNVA+N Sbjct: 96 IQAMNVALN 104>NP_001265371 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 289 KLMKICMN 296>NP_004508 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 423 KLMKICMN 430>NP_001014795 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 423 KLMKICMN 430>NP_001014794 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 423 KLMKICMN 430>NP_001265370 Length = 391 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 362 KLMKICMN 369>NP_057937 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 +L+NV MN Sbjct: 32 ELLNVCMN 39>NP_057941 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 +L+NV MN Sbjct: 32 ELLNVCMN 39>NP_057936 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 +L+NV MN Sbjct: 32 ELLNVCMN 39>NP_000793 Length = 257 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 KLMNVAMN 9 +L+NV MN Sbjct: 32 ELLNVCMN 39>XP_005252962 Length = 318 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 289 KLMKICMN 296>XP_005252961 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 KLMNVAMN 9 KLM + MN Sbjct: 423 KLMKICMN 430Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.132 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 249,838 Number of extensions: 219 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |