Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_000258                                                              18    1482
NP_001035957                                                           18    1482
XP_006721991                                                           18    1482
XP_006721990                                                           18    1482
XP_006721989                                                           18    1482
XP_005258041                                                           18    1482
XP_006721988                                                           18    1482
XP_006721987                                                           18    1482
XP_006721986                                                           18    1482
XP_005258040                                                           18    1482
XP_006721985                                                           18    1482
NP_060109                                                              17    2528
NP_031363                                                              17    4312
NP_031361                                                              17    4312
XP_006713504                                                           17    4312
XP_006713503                                                           17    4312
XP_005265688                                                           17    4312
XP_006713502                                                           17    4312
XP_006713501                                                           17    4312
XP_006713500                                                           17    4312
XP_005265687                                                           17    4312
NP_001139114                                                           16    5631
NP_055502                                                              16    5631
NP_597731                                                              16    5631
XP_006713894                                                           16    5631
XP_006713893                                                           16    5631
XP_006713892                                                           16    5631
XP_005269431                                                           16    5631
XP_006713891                                                           16    5631
XP_006713890                                                           16    5631
NP_001161384                                                           16    7355
NP_001161383                                                           16    7355
NP_995322                                                              16    7355
NP_001161388                                                           16    7355
NP_001161389                                                           16    7355
NP_001161387                                                           16    7355
NP_078897                                                              16    7355
XP_005254365                                                           16    7355
XP_005247825                                                           16    7355
XP_005247824                                                           16    7355
NP_001073893                                                           15    9605
NP_116754                                                              15    9605
NP_542415                                                              15    9605
NP_116755                                                              15    9605
NP_542416                                                              15    9605
NP_542414                                                              15    9605
NP_006255                                                              15    9605
NP_001014364                                                           15    9605
NP_775871                                                              15    9605
XP_006721547                                                           15    9605
XP_005256611                                                           15    9605
XP_005256609                                                           15    9605
XP_005256607                                                           15    9605
XP_005256608                                                           15    9605
XP_006721546                                                           15    9605
XP_005256606                                                           15    9605
XP_005263224                                                           15    9605
>NP_000258
          Length = 2818

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1350 IISSSSEF 1357
>NP_001035957
          Length = 2839

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1350 IISSSSEF 1357
>XP_006721991
          Length = 1632

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1360 IISSSSEF 1367
>XP_006721990
          Length = 2823

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1360 IISSSSEF 1367
>XP_006721989
          Length = 2823

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1360 IISSSSEF 1367
>XP_005258041
          Length = 2836

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1350 IISSSSEF 1357
>XP_006721988
          Length = 2846

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1360 IISSSSEF 1367
>XP_006721987
          Length = 2849

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1360 IISSSSEF 1367
>XP_006721986
          Length = 2854

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1347 IISSSSEF 1354
>XP_005258040
          Length = 2857

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1350 IISSSSEF 1357
>XP_006721985
          Length = 2867

 Score = 18.1 bits (35), Expect =  1482
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 1    IISSSSEF 8
            IISSSSEF
Sbjct: 1360 IISSSSEF 1367
>NP_060109
          Length = 2916

 Score = 17.3 bits (33), Expect =  2528
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1    IISSSSEFS 9
            I+SSS EFS
Sbjct: 2029 ILSSSKEFS 2037
>NP_031363
          Length = 1778

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1342 SSSSEFS 1348
>NP_031361
          Length = 1755

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1342 SSSSEFS 1348
>XP_006713504
          Length = 1078

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSSEFS
Sbjct: 642 SSSSEFS 648
>XP_006713503
          Length = 1438

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1345 SSSSEFS 1351
>XP_005265688
          Length = 1480

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1044 SSSSEFS 1050
>XP_006713502
          Length = 1578

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1345 SSSSEFS 1351
>XP_006713501
          Length = 1727

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1345 SSSSEFS 1351
>XP_006713500
          Length = 1746

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1310 SSSSEFS 1316
>XP_005265687
          Length = 1758

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3    SSSSEFS 9
            SSSSEFS
Sbjct: 1345 SSSSEFS 1351
>NP_001139114
          Length = 927

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 520 VTSSSSQFS 528
>NP_055502
          Length = 972

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 565 VTSSSSQFS 573
>NP_597731
          Length = 923

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           +ISSSS F+
Sbjct: 257 VISSSSSFA 265
>XP_006713894
          Length = 845

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 413 VTSSSSQFS 421
>XP_006713893
          Length = 845

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 413 VTSSSSQFS 421
>XP_006713892
          Length = 952

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 520 VTSSSSQFS 528
>XP_005269431
          Length = 987

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 580 VTSSSSQFS 588
>XP_006713891
          Length = 997

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 565 VTSSSSQFS 573
>XP_006713890
          Length = 1012

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   IISSSSEFS 9
           + SSSS+FS
Sbjct: 580 VTSSSSQFS 588
>NP_001161384
          Length = 833

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>NP_001161383
          Length = 788

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>NP_995322
          Length = 500

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1  IISSSSEF 8
          +IS SSEF
Sbjct: 47 VISPSSEF 54
>NP_001161388
          Length = 213

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>NP_001161389
          Length = 177

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>NP_001161387
          Length = 213

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>NP_078897
          Length = 833

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>XP_005254365
          Length = 500

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1  IISSSSEF 8
          +IS SSEF
Sbjct: 47 VISPSSEF 54
>XP_005247825
          Length = 309

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>XP_005247824
          Length = 310

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  IISSSSEF 8
          IISSSS++
Sbjct: 41 IISSSSDY 48
>NP_001073893
          Length = 1682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>NP_116754
          Length = 1048

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1  IISSSSEFS 9
          IISSSS  S
Sbjct: 8  IISSSSSLS 16
>NP_542415
          Length = 2294

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   IISSSSEF 8
           IISS S+F
Sbjct: 421 IISSESDF 428
>NP_116755
          Length = 1340

 Score = 15.4 bits (28), Expect =  9605
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1  IISSSSEFS 9
          IISSSS  S
Sbjct: 8  IISSSSSLS 16
>NP_542416
          Length = 2490

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   IISSSSEF 8
           IISS S+F
Sbjct: 421 IISSESDF 428
>NP_542414
          Length = 2485

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   IISSSSEF 8
           IISS S+F
Sbjct: 421 IISSESDF 428
>NP_006255
          Length = 2466

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   IISSSSEF 8
           IISS S+F
Sbjct: 421 IISSESDF 428
>NP_001014364
          Length = 2391

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSS+EFS
Sbjct: 408 SSSNEFS 414
>NP_775871
          Length = 8384

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 2   ISSSSEFS 9
           ++SSSE+S
Sbjct: 442 VTSSSEYS 449
>XP_006721547
          Length = 1638

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_005256611
          Length = 1643

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_005256609
          Length = 1682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_005256607
          Length = 1682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_005256608
          Length = 1682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_006721546
          Length = 1682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_005256606
          Length = 1682

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   SSSSEFS 9
           SSSS+FS
Sbjct: 866 SSSSQFS 872
>XP_005263224
          Length = 2491

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   IISSSSEF 8
           IISS S+F
Sbjct: 427 IISSESDF 434
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.297    0.109    0.231 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 392,315
Number of extensions: 509
Number of successful extensions: 57
Number of sequences better than 10000.0: 57
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 57
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.2 bits)
S2: 28 (15.4 bits)

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