Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_003473 20 390 NP_733751 20 390 XP_006719679 20 390 XP_005269219 20 390 XP_006719678 20 390 XP_006719677 20 390 XP_006716142 20 390 XP_005250088 20 390 XP_006716141 20 390 XP_005250085 20 390 XP_006716140 20 390 XP_005250084 20 390 XP_005250083 20 390 XP_005250082 20 390 NP_777573 18 1935 XP_005267442 18 1935 XP_005249571 17 2528 NP_001157932 17 4312 NP_001265432 16 5631 NP_689926 16 5631 NP_114408 16 5631 NP_001265433 16 5631 NP_001108070 16 5631 NP_001019827 16 5631 NP_001152758 16 5631 XP_006723327 16 5631 XP_006723326 16 5631 XP_005259103 16 5631 XP_006723325 16 5631 XP_006723324 16 5631 XP_005259102 16 5631 XP_006723323 16 5631 NP_065392 16 7355 XP_005260820 16 7355 NP_001847 15 9605 XP_006711313 15 9605 XP_005270538 15 9605 NP_068800 15 9605>NP_003473 Length = 5537 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 5459 HVIDATLTG 5467>NP_733751 Length = 4911 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4833 HVIDATLTG 4841>XP_006719679 Length = 5536 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 5458 HVIDATLTG 5466>XP_005269219 Length = 5537 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 5459 HVIDATLTG 5467>XP_006719678 Length = 5539 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 5461 HVIDATLTG 5469>XP_006719677 Length = 5540 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 5462 HVIDATLTG 5470>XP_006716142 Length = 4927 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4849 HVIDATLTG 4857>XP_005250088 Length = 4928 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4850 HVIDATLTG 4858>XP_006716141 Length = 4959 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4881 HVIDATLTG 4889>XP_005250085 Length = 4979 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4901 HVIDATLTG 4909>XP_006716140 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4904 HVIDATLTG 4912>XP_005250084 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4904 HVIDATLTG 4912>XP_005250083 Length = 4982 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4904 HVIDATLTG 4912>XP_005250082 Length = 4983 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HVIDAMLTG 9 HVIDA LTG Sbjct: 4905 HVIDATLTG 4913>NP_777573 Length = 636 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 HVIDAMLT 8 HV+DA+LT Sbjct: 525 HVLDAILT 532>XP_005267442 Length = 650 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 HVIDAMLT 8 HV+DA+LT Sbjct: 539 HVLDAILT 546>XP_005249571 Length = 566 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 HVIDAMLT 8 HVID +LT Sbjct: 54 HVIDGLLT 61>NP_001157932 Length = 342 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 H I A+LTG Sbjct: 251 HYIQAILTG 259>NP_001265432 Length = 705 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+ MLTG Sbjct: 222 HVLVLMLTG 230>NP_689926 Length = 705 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+ MLTG Sbjct: 222 HVLVLMLTG 230>NP_114408 Length = 669 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VIDAMLTG 9 ++DA+LTG Sbjct: 113 LVDAVLTG 120>NP_001265433 Length = 613 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+ MLTG Sbjct: 130 HVLVLMLTG 138>NP_001108070 Length = 283 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 223 HVVDVELSG 231>NP_001019827 Length = 178 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 118 HVVDVELSG 126>NP_001152758 Length = 649 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VIDAMLTG 9 ++DA+LTG Sbjct: 113 LVDAVLTG 120>XP_006723327 Length = 248 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 168 HVVDVELSG 176>XP_006723326 Length = 257 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 177 HVVDVELSG 185>XP_005259103 Length = 371 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 311 HVVDVELSG 319>XP_006723325 Length = 391 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 311 HVVDVELSG 319>XP_006723324 Length = 420 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 340 HVVDVELSG 348>XP_005259102 Length = 421 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 361 HVVDVELSG 369>XP_006723323 Length = 441 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 HV+D L+G Sbjct: 361 HVVDVELSG 369>NP_065392 Length = 416 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 HVIDAMLTG 9 H+ D M TG Sbjct: 107 HIGDVMFTG 115>XP_005260820 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 HVIDAMLTG 9 H+ D M TG Sbjct: 107 HIGDVMFTG 115>NP_001847 Length = 1604 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IDAMLTG 9 +DA LTG Sbjct: 289 VDAQLTG 295>XP_006711313 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HVIDAMLTG 9 H++ AML G Sbjct: 32 HILMAMLIG 40>XP_005270538 Length = 1588 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 IDAMLTG 9 +DA LTG Sbjct: 289 VDAQLTG 295>NP_068800 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 HVIDAMLTG 9 H I +LTG Sbjct: 211 HAIKGLLTG 219Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.329 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 360,456 Number of extensions: 533 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |