Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245202 19 869 NP_001245200 19 869 NP_001161091 19 869 NP_000240 19 869 NP_001161090 19 869 NP_001161089 19 869 NP_001245203 19 869 XP_005265221 19 869 XP_005265220 19 869 NP_078831 18 1935 NP_036294 18 1935 NP_689777 16 7355 NP_060360 16 7355 NP_002449 16 7355 NP_056058 16 7355 NP_858047 16 7355 XP_006716574 16 7355 XP_006716573 16 7355 XP_005250858 16 7355 XP_005250857 16 7355 NP_000476 15 9605 NP_061959 15 9605 NP_775760 15 9605 XP_006719530 15 9605 XP_005271456 15 9605>NP_001245202 Length = 515 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 23 HRLVESTSL 31>NP_001245200 Length = 687 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 264 HRLVESTSL 272>NP_001161091 Length = 515 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 23 HRLVESTSL 31>NP_000240 Length = 756 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 264 HRLVESTSL 272>NP_001161090 Length = 515 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 23 HRLVESTSL 31>NP_001161089 Length = 658 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 166 HRLVESTSL 174>NP_001245203 Length = 515 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 23 HRLVESTSL 31>XP_005265221 Length = 515 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 23 HRLVESTSL 31>XP_005265220 Length = 515 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 HSLVESTSL 9 H LVESTSL Sbjct: 23 HRLVESTSL 31>NP_078831 Length = 533 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 HSLVESTSL 9 HS+VEST++ Sbjct: 249 HSMVESTAV 257>NP_036294 Length = 539 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 HSLVESTSL 9 HS+VEST++ Sbjct: 255 HSMVESTAV 263>NP_689777 Length = 3997 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>NP_060360 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>NP_002449 Length = 5762 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 HSLVESTS 8 H+LV+ST+ Sbjct: 275 HALVDSTA 282>NP_056058 Length = 863 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>NP_858047 Length = 415 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>XP_006716574 Length = 968 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>XP_006716573 Length = 1776 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>XP_005250858 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>XP_005250857 Length = 4022 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H+LVES L Sbjct: 256 HTLVESLKL 264>NP_000476 Length = 180 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVESTSL 9 SLVE TSL Sbjct: 155 SLVELTSL 162>NP_061959 Length = 540 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SLVESTSL 9 SLV++TSL Sbjct: 81 SLVDATSL 88>NP_775760 Length = 1585 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 HS EST+L Sbjct: 486 HSAKESTAL 494>XP_006719530 Length = 439 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 SLVESTSL 9 SLV++TSL Sbjct: 81 SLVDATSL 88>XP_005271456 Length = 344 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HSLVESTSL 9 H++ STSL Sbjct: 108 HAMASSTSL 116Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.110 0.262 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 331,860 Number of extensions: 522 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |