Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_075391 17 2528 XP_006726267 17 2528 XP_005276792 17 2528 XP_006711553 17 2528 XP_005245516 17 2528 NP_065914 16 5631 NP_001167628 16 5631 NP_001276323 16 5631 NP_001025110 16 5631 NP_001161055 16 5631 NP_065961 16 5631 NP_001158137 16 5631 XP_006716674 16 5631 XP_006716134 16 5631 XP_005245596 16 5631 NP_003559 16 5631 NP_001167629 16 5631 NP_758952 16 7355 NP_000200 15 9605 NP_003097 15 9605 NP_001166938 15 9605 NP_003301 15 9605 NP_690599 15 9605 XP_006711956 15 9605>NP_075391 Length = 1042 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HHGAAQI 7 HHG AQ+ Sbjct: 219 HHGTAQL 225>XP_006726267 Length = 1053 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HHGAAQI 7 HHG AQ+ Sbjct: 164 HHGTAQL 170>XP_005276792 Length = 1108 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HHGAAQI 7 HHG AQ+ Sbjct: 219 HHGTAQL 225>XP_006711553 Length = 1053 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HHGAAQI 7 HHG AQ+ Sbjct: 164 HHGTAQL 170>XP_005245516 Length = 1108 Score = 17.3 bits (33), Expect = 2528 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 HHGAAQI 7 HHG AQ+ Sbjct: 219 HHGTAQL 225>NP_065914 Length = 1243 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 481 HGAAQEAL 488>NP_001167628 Length = 1181 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 419 HGAAQEAL 426>NP_001276323 Length = 1231 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 469 HGAAQEAL 476>NP_001025110 Length = 1231 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 469 HGAAQEAL 476>NP_001161055 Length = 1231 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 469 HGAAQEAL 476>NP_065961 Length = 1934 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 H AAQ+A+ Sbjct: 87 HSAAQVAL 94>NP_001158137 Length = 1950 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 H AAQ+A+ Sbjct: 87 HSAAQVAL 94>XP_006716674 Length = 845 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 481 HGAAQEAL 488>XP_006716134 Length = 1847 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 H AAQ+A+ Sbjct: 11 HSAAQVAL 18>XP_005245596 Length = 362 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HG AQ+A+ Sbjct: 254 HGDAQVAL 261>NP_003559 Length = 345 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HG AQ+A+ Sbjct: 254 HGDAQVAL 261>NP_001167629 Length = 1145 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HGAAQIAM 9 HGAAQ A+ Sbjct: 469 HGAAQEAL 476>NP_758952 Length = 1137 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 1 HHGAAQ 6 HH AAQ Sbjct: 947 HHSAAQ 952>NP_000200 Length = 283 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 HHGAAQIAM 9 HH AQ+A+ Sbjct: 84 HHLPAQLAL 92>NP_003097 Length = 317 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 HGAAQI 7 HGAAQ+ Sbjct: 189 HGAAQM 194>NP_001166938 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 HHGAAQIAM 9 H+G++ +AM Sbjct: 11 HYGSSPLAM 19>NP_003301 Length = 387 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 5/8 (62%) Query: 1 HHGAAQIA 8 HH Q+A Sbjct: 195 HHNCTQVA 202>NP_690599 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 HHGAAQIAM 9 H+G++ +AM Sbjct: 11 HYGSSPLAM 19>XP_006711956 Length = 287 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 5/8 (62%) Query: 1 HHGAAQIA 8 HH Q+A Sbjct: 95 HHNCTQVA 102Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.124 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 438,538 Number of extensions: 234 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |