Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 19 665 NP_001263689 19 665 NP_001119584 19 665 NP_001119586 19 665 NP_001263625 19 665 NP_001119590 19 665 NP_001263690 19 665 NP_001119585 19 665 NP_001263624 19 665 NP_001119588 19 665 NP_001119587 19 665 NP_001119589 19 665 NP_000869 16 5631 NP_001171899 16 7355 NP_009160 16 7355 NP_001171900 16 7355 XP_005261376 16 7355 XP_006724183 16 7355 XP_006724182 16 7355 XP_006724181 16 7355 XP_006724180 16 7355 NP_115642 15 9605 NP_001274684 15 9605 XP_005265791 15 9605 XP_005265788 15 9605>NP_000537 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 154 GTRVRAMAI 162>NP_001263689 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 115 GTRVRAMAI 123>NP_001119584 Length = 393 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 154 GTRVRAMAI 162>NP_001119586 Length = 341 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 154 GTRVRAMAI 162>NP_001263625 Length = 302 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 115 GTRVRAMAI 123>NP_001119590 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 115 GTRVRAMAI 123>NP_001263690 Length = 354 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 115 GTRVRAMAI 123>NP_001119585 Length = 346 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 154 GTRVRAMAI 162>NP_001263624 Length = 307 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 115 GTRVRAMAI 123>NP_001119588 Length = 209 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 22 GTRVRAMAI 30>NP_001119587 Length = 261 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 22 GTRVRAMAI 30>NP_001119589 Length = 214 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVRVMAI 9 GTRVR MAI Sbjct: 22 GTRVRAMAI 30>NP_000869 Length = 551 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 G R RVMAI Sbjct: 113 GVRWRVMAI 121>NP_001171899 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 426 GTEVRVRAL 434>NP_009160 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 426 GTEVRVRAL 434>NP_001171900 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 385 GTEVRVRAL 393>XP_005261376 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 385 GTEVRVRAL 393>XP_006724183 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 385 GTEVRVRAL 393>XP_006724182 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 426 GTEVRVRAL 434>XP_006724181 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 426 GTEVRVRAL 434>XP_006724180 Length = 486 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTRVRVMAI 9 GT VRV A+ Sbjct: 426 GTEVRVRAL 434>NP_115642 Length = 1984 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTRVRV 6 GTRVR+ Sbjct: 992 GTRVRI 997>NP_001274684 Length = 336 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTRVRV 6 GTRVR+ Sbjct: 33 GTRVRI 38>XP_005265791 Length = 272 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTRVRV 6 GTRVR+ Sbjct: 33 GTRVRI 38>XP_005265788 Length = 301 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTRVRV 6 GTRVR+ Sbjct: 33 GTRVRI 38Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.144 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 244,850 Number of extensions: 243 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |