Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1482 NP_001263689 18 1482 NP_001119584 18 1482 NP_001119586 18 1482 NP_001263625 18 1482 NP_001119590 18 1482 NP_001263690 18 1482 NP_001119585 18 1482 NP_001263624 18 1482 NP_001119588 18 1482 NP_001119587 18 1482 NP_001119589 18 1482 NP_001035931 17 2528 NP_001035930 17 2528 NP_002769 17 2528 NP_001135780 17 4312 XP_005253069 16 5631 XP_005253068 16 5631 XP_006718322 16 5631 XP_005253066 16 5631 NP_060426 16 5631 NP_006512 16 7355 NP_005462 16 7355 XP_005253460 16 7355 XP_006719161 16 7355 XP_006719160 16 7355 XP_006717199 16 7355 XP_006714810 16 7355 XP_005268405 16 7355 NP_060558 16 7355 NP_001277157 15 9605 NP_942123 15 9605 NP_001171441 15 9605 NP_444506 15 9605 NP_001073312 15 9605 NP_001171442 15 9605 NP_001171440 15 9605 NP_001158136 15 9605 NP_005766 15 9605 NP_056068 15 9605 NP_055749 15 9605 NP_055144 15 9605 NP_001007034 15 9605 NP_945319 15 9605 XP_005256630 15 9605 XP_005256629 15 9605 XP_006719984 15 9605 XP_006719983 15 9605 XP_006719982 15 9605 XP_006719981 15 9605 XP_006719980 15 9605 XP_005254089 15 9605 XP_006719979 15 9605 XP_006716330 15 9605 XP_005273427 15 9605 XP_005248555 15 9605 XP_006714665 15 9605 XP_005264424 15 9605 XP_006710775 15 9605 XP_005263536 15 9605>NP_000537 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001263689 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119584 Length = 393 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001119586 Length = 341 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001263625 Length = 302 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119590 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001263690 Length = 354 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119585 Length = 346 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 154 GTRVRAMAI 162>NP_001263624 Length = 307 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 115 GTRVRAMAI 123>NP_001119588 Length = 209 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 22 GTRVRAMAI 30>NP_001119587 Length = 261 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 22 GTRVRAMAI 30>NP_001119589 Length = 214 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTRV AMAI Sbjct: 22 GTRVRAMAI 30>NP_001035931 Length = 526 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTR+PA+ + Sbjct: 392 GTRLPALTV 400>NP_001035930 Length = 527 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTR+PA+ + Sbjct: 393 GTRLPALTV 401>NP_002769 Length = 524 Score = 17.3 bits (33), Expect = 2528 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 GTR+PA+ + Sbjct: 390 GTRLPALTV 398>NP_001135780 Length = 2156 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 G+R+PA A+ Sbjct: 1757 GSRIPAKAL 1765>XP_005253069 Length = 1238 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVPAM 7 GTRVP++ Sbjct: 316 GTRVPSL 322>XP_005253068 Length = 1269 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVPAM 7 GTRVP++ Sbjct: 316 GTRVPSL 322>XP_006718322 Length = 1298 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVPAM 7 GTRVP++ Sbjct: 316 GTRVPSL 322>XP_005253066 Length = 1298 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 GTRVPAM 7 GTRVP++ Sbjct: 316 GTRVPSL 322>NP_060426 Length = 448 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTRVPAMAI 9 GTR PA+ + Sbjct: 183 GTRTPAVTL 191>NP_006512 Length = 575 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GTRVPAMA 8 G+R PAM+ Sbjct: 100 GSRTPAMS 107>NP_005462 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TRVPAMAI 9 T+VP MA+ Sbjct: 179 TKVPTMAL 186>XP_005253460 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GTR PA + Sbjct: 349 GTRTPAQVL 357>XP_006719161 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GTR PA + Sbjct: 349 GTRTPAQVL 357>XP_006719160 Length = 483 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GTR PA + Sbjct: 368 GTRTPAQVL 376>XP_006717199 Length = 319 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 RVPAMA 8 RVPAMA Sbjct: 20 RVPAMA 25>XP_006714810 Length = 289 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TRVPAMAI 9 T+VP MA+ Sbjct: 179 TKVPTMAL 186>XP_005268405 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 TRVPAMAI 9 T+VP MA+ Sbjct: 208 TKVPTMAL 215>NP_060558 Length = 464 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GTR PA + Sbjct: 349 GTRTPAQVL 357>NP_001277157 Length = 238 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTRVPAMAI 9 G+R PA A+ Sbjct: 20 GSRTPASAL 28>NP_942123 Length = 250 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTRVPAMAI 9 G+R PA A+ Sbjct: 20 GSRTPASAL 28>NP_001171441 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RVPAMA 8 R+PAMA Sbjct: 589 RIPAMA 594>NP_444506 Length = 693 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RVPAMA 8 R+PAMA Sbjct: 625 RIPAMA 630>NP_001073312 Length = 1759 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GTRVPAMA 8 G R PA+A Sbjct: 1734 GARTPALA 1741>NP_001171442 Length = 656 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RVPAMA 8 R+PAMA Sbjct: 588 RIPAMA 593>NP_001171440 Length = 678 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RVPAMA 8 R+PAMA Sbjct: 610 RIPAMA 615>NP_001158136 Length = 2623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTRVPAMAI 9 G+R PA A+ Sbjct: 20 GSRTPASAL 28>NP_005766 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTRVPAM 7 GTRVP + Sbjct: 32 GTRVPVI 38>NP_056068 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 G R+PA+++ Sbjct: 197 GNRLPAVSV 205>NP_055749 Length = 848 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 747 GTNVPEMFI 755>NP_055144 Length = 1401 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTRVPA 6 GT+VPA Sbjct: 896 GTKVPA 901>NP_001007034 Length = 209 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GTRVPA 6 GT+VPA Sbjct: 70 GTKVPA 75>NP_945319 Length = 867 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 766 GTNVPEMFI 774>XP_005256630 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 G R+PA+++ Sbjct: 197 GNRLPAVSV 205>XP_005256629 Length = 575 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GTRVPAMAI 9 G R+PA+++ Sbjct: 197 GNRLPAVSV 205>XP_006719984 Length = 613 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 493 GTNVPEMFI 501>XP_006719983 Length = 886 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 766 GTNVPEMFI 774>XP_006719982 Length = 894 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 774 GTNVPEMFI 782>XP_006719981 Length = 912 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 792 GTNVPEMFI 800>XP_006719980 Length = 913 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 812 GTNVPEMFI 820>XP_005254089 Length = 927 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 807 GTNVPEMFI 815>XP_006719979 Length = 932 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 GTRVPAMAI 9 GT VP M I Sbjct: 812 GTNVPEMFI 820>XP_006716330 Length = 671 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTRVPAM 7 GTRVP + Sbjct: 32 GTRVPVI 38>XP_005273427 Length = 725 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GTRVPAM 7 GTRVP + Sbjct: 86 GTRVPVI 92>XP_005248555 Length = 2626 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTRVPAMAI 9 G+R PA A+ Sbjct: 20 GSRTPASAL 28>XP_006714665 Length = 2651 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GTRVPAMAI 9 G+R PA A+ Sbjct: 20 GSRTPASAL 28>XP_005264424 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RVPAMA 8 R+PAMA Sbjct: 356 RIPAMA 361>XP_006710775 Length = 1759 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GTRVPAMA 8 G R PA+A Sbjct: 1734 GARTPALA 1741>XP_005263536 Length = 1783 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GTRVPAMA 8 G R PA+A Sbjct: 1758 GARTPALA 1765Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 493,910 Number of extensions: 663 Number of successful extensions: 60 Number of sequences better than 10000.0: 60 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 60 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |