Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001094871 17 3301 XP_006723390 17 3301 NP_001004470 17 4312 NP_003626 17 4312 XP_005270313 17 4312 XP_005270312 17 4312 XP_006718109 17 4312 NP_000101 16 5631 NP_060787 16 5631 XP_005248229 16 5631 XP_006714030 16 5631 XP_006710460 16 5631 XP_005270619 16 5631 NP_116213 16 7355 NP_001004125 16 7355 NP_001135918 16 7355 NP_065208 16 7355 NP_000669 16 7355 NP_000557 16 7355 NP_001004340 16 7355 NP_001017986 16 7355 NP_001231839 16 7355 XP_005273533 16 7355 XP_005263884 16 7355 XP_006712870 16 7355 XP_005245015 16 7355 XP_005245014 16 7355 NP_065210 16 7355 NP_065209 16 7355 NP_000028 16 7355 NP_005682 15 9605 NP_064693 15 9605 NP_001035830 15 9605 NP_689498 15 9605 NP_115486 15 9605 XP_005253348 15 9605 XP_005253347 15 9605 XP_006719088 15 9605 XP_005253346 15 9605 XP_005253344 15 9605 XP_005253345 15 9605 XP_005253343 15 9605 XP_005253341 15 9605 XP_005266178 15 9605 XP_005266176 15 9605>NP_001094871 Length = 348 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GTPLALR 7 GTPLAL+ Sbjct: 85 GTPLALK 91>XP_006723390 Length = 348 Score = 16.9 bits (32), Expect = 3301 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GTPLALR 7 GTPLAL+ Sbjct: 85 GTPLALK 91>NP_001004470 Length = 398 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTPLALRAV 9 GTP ALR + Sbjct: 46 GTPAALRTL 54>NP_003626 Length = 883 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TPLALRAV 9 TPLALR++ Sbjct: 739 TPLALRSL 746>XP_005270313 Length = 509 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TPLALRAV 9 TPLALR++ Sbjct: 365 TPLALRSL 372>XP_005270312 Length = 815 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TPLALRAV 9 TPLALR++ Sbjct: 739 TPLALRSL 746>XP_006718109 Length = 821 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TPLALRAV 9 TPLALR++ Sbjct: 677 TPLALRSL 684>NP_000101 Length = 1025 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+ALRAV Sbjct: 772 PIALRAV 778>NP_060787 Length = 526 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTPLALRA 8 G+P ALRA Sbjct: 251 GSPTALRA 258>XP_005248229 Length = 461 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTPLALRA 8 G+P ALRA Sbjct: 186 GSPTALRA 193>XP_006714030 Length = 495 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTPLALRA 8 G+P ALRA Sbjct: 220 GSPTALRA 227>XP_006710460 Length = 889 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+ALRAV Sbjct: 772 PIALRAV 778>XP_005270619 Length = 953 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+ALRAV Sbjct: 700 PIALRAV 706>NP_116213 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TPLALRAV 9 TP A+RAV Sbjct: 36 TPAAVRAV 43>NP_001004125 Length = 212 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GTPLALRA 8 G+P ALRA Sbjct: 152 GSPRALRA 159>NP_001135918 Length = 1897 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TPLALR 7 TPLALR Sbjct: 1421 TPLALR 1426>NP_065208 Length = 1856 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TPLALR 7 TPLALR Sbjct: 1380 TPLALR 1385>NP_000669 Length = 572 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTPLALRAV 9 G PLAL A+ Sbjct: 459 GAPLALTAL 467>NP_000557 Length = 374 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTPLALR 7 G PLALR Sbjct: 117 GEPLALR 123>NP_001004340 Length = 188 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTPLALR 7 G PLALR Sbjct: 25 GEPLALR 31>NP_001017986 Length = 280 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTPLALR 7 G PLALR Sbjct: 117 GEPLALR 123>NP_001231839 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTPLALR 7 G PLALR Sbjct: 117 GEPLALR 123>XP_005273533 Length = 1921 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TPLALR 7 TPLALR Sbjct: 1421 TPLALR 1426>XP_005263884 Length = 554 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TPLALRAV 9 TP A+RAV Sbjct: 36 TPAAVRAV 43>XP_006712870 Length = 555 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TPLALRAV 9 TP A+RAV Sbjct: 36 TPAAVRAV 43>XP_005245015 Length = 282 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTPLALR 7 G PLALR Sbjct: 25 GEPLALR 31>XP_005245014 Length = 375 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 GTPLALR 7 G PLALR Sbjct: 118 GEPLALR 124>NP_065210 Length = 1719 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TPLALR 7 TPLALR Sbjct: 1380 TPLALR 1385>NP_065209 Length = 1881 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TPLALR 7 TPLALR Sbjct: 1380 TPLALR 1385>NP_000028 Length = 1880 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TPLALR 7 TPLALR Sbjct: 1380 TPLALR 1385>NP_005682 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>NP_064693 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>NP_001035830 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GTPLALRAV 9 G P ALRA+ Sbjct: 48 GAPEALRAL 56>NP_689498 Length = 433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTPLALRAV 9 G PL RA+ Sbjct: 33 GAPLPFRAI 41>NP_115486 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 GTPLALRA 8 G PL LRA Sbjct: 53 GPPLLLRA 60>XP_005253348 Length = 1229 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253347 Length = 1502 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_006719088 Length = 1536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253346 Length = 1536 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253344 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253345 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253343 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005253341 Length = 1549 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 PLALRAV 9 P+A+RAV Sbjct: 252 PIAMRAV 258>XP_005266178 Length = 442 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTPLALRAV 9 G PL RA+ Sbjct: 33 GAPLPFRAI 41>XP_005266176 Length = 459 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 GTPLALRAV 9 G PL RA+ Sbjct: 33 GAPLPFRAI 41Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 617,483 Number of extensions: 861 Number of successful extensions: 45 Number of sequences better than 10000.0: 45 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 45 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |