Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 20 509 XP_003960842 17 4312 XP_003846346 17 4312 XP_003846679 17 4312 NP_663748 17 4312 NP_037450 16 5631 NP_001005356 16 5631 NP_055572 16 5631 NP_001077007 16 5631 NP_001138914 16 5631 NP_079455 16 7355 NP_116024 16 7355 NP_001229526 16 7355 XP_005273222 16 7355 XP_006711450 16 7355 XP_005273221 16 7355 NP_114437 15 9605 NP_056477 15 9605 NP_001264044 15 9605 NP_115618 15 9605 XP_006713726 15 9605 XP_006712050 15 9605 XP_005264311 15 9605 XP_006712049 15 9605>NP_115803 Length = 1156 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 GSGQSKVM 8 GSGQSKVM Sbjct: 503 GSGQSKVM 510>XP_003960842 Length = 161 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSGQSK+ Sbjct: 153 GSGQSKL 159>XP_003846346 Length = 161 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSGQSK+ Sbjct: 153 GSGQSKL 159>XP_003846679 Length = 161 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSGQSK+ Sbjct: 153 GSGQSKL 159>NP_663748 Length = 591 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSGQSK+ Sbjct: 365 GSGQSKL 371>NP_037450 Length = 2229 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GSGQSK 6 GSGQSK Sbjct: 1730 GSGQSK 1735>NP_001005356 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSG+SKV Sbjct: 111 GSGKSKV 117>NP_055572 Length = 1016 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 GSGQSK 6 GSGQSK Sbjct: 531 GSGQSK 536>NP_001077007 Length = 1075 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSG+SKV Sbjct: 111 GSGKSKV 117>NP_001138914 Length = 508 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSGQSKV 7 GSG+SKV Sbjct: 111 GSGKSKV 117>NP_079455 Length = 1894 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGQSKVMV 9 +GQ KVMV Sbjct: 1207 TGQHKVMV 1214>NP_116024 Length = 224 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSGQSKVMV 9 G G+ K+MV Sbjct: 93 GKGEYKIMV 101>NP_001229526 Length = 175 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSGQSKVMV 9 G G+ K+MV Sbjct: 44 GKGEYKIMV 52>XP_005273222 Length = 1823 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGQSKVMV 9 +GQ KVMV Sbjct: 1222 TGQHKVMV 1229>XP_006711450 Length = 1952 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGQSKVMV 9 +GQ KVMV Sbjct: 1222 TGQHKVMV 1229>XP_005273221 Length = 1974 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGQSKVMV 9 +GQ KVMV Sbjct: 1222 TGQHKVMV 1229>NP_114437 Length = 1053 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSGQSKVMV 9 GSG +VM+ Sbjct: 529 GSGDERVMM 537>NP_056477 Length = 1749 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GSGQSKVMV 9 G G+++VMV Sbjct: 573 GGGKTEVMV 581>NP_001264044 Length = 4516 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 GSGQSKVM 8 G+G+SK++ Sbjct: 2177 GTGKSKIL 2184>NP_115618 Length = 1896 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSGQSKVMV 9 G GQ+K+ V Sbjct: 179 GQGQAKLFV 187>XP_006713726 Length = 1910 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSGQSKVMV 9 G GQ+K+ V Sbjct: 197 GQGQAKLFV 205>XP_006712050 Length = 1716 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GSGQSKVMV 9 G G+++VMV Sbjct: 573 GGGKTEVMV 581>XP_005264311 Length = 1727 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GSGQSKVMV 9 G G+++VMV Sbjct: 551 GGGKTEVMV 559>XP_006712049 Length = 1728 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GSGQSKVMV 9 G G+++VMV Sbjct: 552 GGGKTEVMV 560Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.121 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 535,587 Number of extensions: 434 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |