Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055365 20 390 NP_149078 16 5631 NP_114437 16 5631 NP_065996 16 5631 NP_055077 16 5631 XP_005270064 16 5631 XP_005270062 16 5631 XP_005270061 16 5631 NP_473368 16 7355 NP_067047 16 7355 NP_006463 16 7355 NP_001277131 16 7355 NP_849191 16 7355 NP_001092105 16 7355 XP_006717280 16 7355 XP_006717279 16 7355 XP_006717278 16 7355 XP_006717277 16 7355 XP_006717276 16 7355 XP_006717275 16 7355 XP_006717274 16 7355 XP_006717273 16 7355 XP_006717272 16 7355 XP_006714546 16 7355 XP_005270562 16 7355>NP_055365 Length = 1032 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 GSERIMLDI 9 GSERI+LDI Sbjct: 312 GSERILLDI 320>NP_149078 Length = 416 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GSERIMLD 8 G+ER++LD Sbjct: 28 GAERLVLD 35>NP_114437 Length = 1053 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 GSERIMLDI 9 G ER+M+++ Sbjct: 531 GDERVMMEL 539>NP_065996 Length = 3184 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSERIML 7 GS+RIML Sbjct: 2533 GSDRIML 2539>NP_055077 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GSERIMLD 8 GSER +LD Sbjct: 463 GSERAVLD 470>XP_005270064 Length = 1615 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSERIML 7 GS+RIML Sbjct: 964 GSDRIML 970>XP_005270062 Length = 3184 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSERIML 7 GS+RIML Sbjct: 2533 GSDRIML 2539>XP_005270061 Length = 3184 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 GSERIML 7 GS+RIML Sbjct: 2533 GSDRIML 2539>NP_473368 Length = 492 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SERIMLDI 9 SE+I++DI Sbjct: 349 SEKILIDI 356>NP_067047 Length = 2506 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>NP_006463 Length = 391 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 GSERIMLDI 9 GS++++LD+ Sbjct: 284 GSKKVILDL 292>NP_001277131 Length = 869 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ERIMLDI 9 +RIMLDI Sbjct: 504 KRIMLDI 510>NP_849191 Length = 994 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ERIMLDI 9 +RIMLDI Sbjct: 629 KRIMLDI 635>NP_001092105 Length = 993 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ERIMLDI 9 +RIMLDI Sbjct: 629 KRIMLDI 635>XP_006717280 Length = 2221 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717279 Length = 2506 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717278 Length = 2566 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717277 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717276 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717275 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717274 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717273 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006717272 Length = 2567 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GSERIMLDI 9 G E ++LDI Sbjct: 1398 GDESVLLDI 1406>XP_006714546 Length = 504 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SERIMLDI 9 SE+I++DI Sbjct: 361 SEKILIDI 368>XP_005270562 Length = 795 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GSERIMLDI 9 GSE+ +LD+ Sbjct: 97 GSEKSLLDL 105Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.147 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 474,637 Number of extensions: 829 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |