Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 17 2528 NP_005913 17 2528 XP_005267046 17 2528 XP_005267045 17 2528 NP_001286 16 5631 NP_002051 16 7355 XP_005270807 16 7355 NP_006741 16 7355 NP_005017 15 9605 NP_620581 15 9605 NP_620583 15 9605 NP_620582 15 9605 NP_001273988 15 9605 NP_001186308 15 9605 NP_055867 15 9605 NP_056227 15 9605 NP_001186307 15 9605 NP_004184 15 9605 XP_005261547 15 9605 XP_006718114 15 9605 XP_005270318 15 9605 XP_006718113 15 9605 XP_006718112 15 9605 XP_006718111 15 9605 XP_006718110 15 9605 XP_006715736 15 9605 XP_006715735 15 9605 XP_005249722 15 9605 XP_006715734 15 9605 XP_006715733 15 9605 XP_006715061 15 9605 XP_005247333 15 9605 XP_006710753 15 9605 XP_005263530 15 9605 XP_006710752 15 9605 XP_006710751 15 9605 XP_006710750 15 9605 XP_006710749 15 9605 NP_056185 15 9605>NP_006715 Length = 1558 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL KLILRL Sbjct: 538 GLRKLILRL 546>NP_005913 Length = 1608 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL KLILRL Sbjct: 538 GLRKLILRL 546>XP_005267046 Length = 1554 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL KLILRL Sbjct: 538 GLRKLILRL 546>XP_005267045 Length = 1604 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL KLILRL Sbjct: 538 GLRKLILRL 546>NP_001286 Length = 355 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 G+IK++LR Sbjct: 221 GIIKILLR 228>NP_002051 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLIKLILRL 9 GLI L+L L Sbjct: 217 GLISLVLNL 225>XP_005270807 Length = 333 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLIKLILRL 9 GLI L+L L Sbjct: 217 GLISLVLNL 225>NP_006741 Length = 540 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GL++L+LR Sbjct: 26 GLVELLLR 33>NP_005017 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 823 GLIEVVLR 830>NP_620581 Length = 360 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IKLILRL 9 +KLILRL Sbjct: 232 LKLILRL 238>NP_620583 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IKLILRL 9 +KLILRL Sbjct: 232 LKLILRL 238>NP_620582 Length = 297 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IKLILRL 9 +KLILRL Sbjct: 232 LKLILRL 238>NP_001273988 Length = 1572 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1214 GKIKLIIR 1221>NP_001186308 Length = 1855 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1202 GLLRLAIRL 1210>NP_055867 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1248 GKIKLIIR 1255>NP_056227 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLIKLILRL 9 G KL+LRL Sbjct: 141 GACKLLLRL 149>NP_001186307 Length = 1856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1203 GLLRLAIRL 1211>NP_004184 Length = 1859 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1202 GLLRLAIRL 1210>XP_005261547 Length = 249 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LIKLILR 8 L+KL+LR Sbjct: 35 LVKLVLR 41>XP_006718114 Length = 1850 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1236 GLLRLAIRL 1244>XP_005270318 Length = 1860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1203 GLLRLAIRL 1211>XP_006718113 Length = 1881 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1224 GLLRLAIRL 1232>XP_006718112 Length = 1889 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1236 GLLRLAIRL 1244>XP_006718111 Length = 1892 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1235 GLLRLAIRL 1243>XP_006718110 Length = 1893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GLIKLILRL 9 GL++L +RL Sbjct: 1236 GLLRLAIRL 1244>XP_006715736 Length = 1573 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1215 GKIKLIIR 1222>XP_006715735 Length = 1606 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1248 GKIKLIIR 1255>XP_005249722 Length = 1607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1249 GKIKLIIR 1256>XP_006715734 Length = 1607 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1249 GKIKLIIR 1256>XP_006715733 Length = 1608 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GLIKLILR 8 G IKLI+R Sbjct: 1250 GKIKLIIR 1257>XP_006715061 Length = 283 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 IKLILRL 9 +KLILRL Sbjct: 155 LKLILRL 161>XP_005247333 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GLIKLILRL 9 G KL+LRL Sbjct: 5 GACKLLLRL 13>XP_006710753 Length = 1015 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 794 GLIEVVLR 801>XP_005263530 Length = 1043 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 822 GLIEVVLR 829>XP_006710752 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 823 GLIEVVLR 830>XP_006710751 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 823 GLIEVVLR 830>XP_006710750 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 823 GLIEVVLR 830>XP_006710749 Length = 1044 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GLIKLILR 8 GLI+++LR Sbjct: 823 GLIEVVLR 830>NP_056185 Length = 290 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 LIKLILR 8 L+KL+LR Sbjct: 76 LVKLVLR 82Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.174 0.453 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 404,119 Number of extensions: 761 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |