Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036284 17 2528 XP_006710605 17 2528 NP_689804 17 3301 NP_001273173 17 3301 NP_001273172 17 3301 XP_006719326 17 3301 XP_006719325 17 3301 NP_000292 17 4312 NP_068380 16 5631 NP_001119593 16 5631 NP_001119594 16 5631 NP_005325 16 5631 XP_005274721 16 5631 XP_006724879 16 5631 XP_006724878 16 5631 XP_005257619 16 5631 XP_006722070 16 5631 XP_005257617 16 5631 XP_005257618 16 5631 XP_005257616 16 5631 NP_060695 16 7355 XP_005251560 16 7355 NP_919047 15 9605 NP_001269796 15 9605 NP_001269800 15 9605 NP_001269801 15 9605 NP_001269799 15 9605 NP_001121163 15 9605 NP_057208 15 9605 NP_001269797 15 9605 NP_001269798 15 9605 NP_000252 15 9605 NP_002514 15 9605 XP_005250598 15 9605 NP_899234 15 9605>NP_036284 Length = 353 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G VSKTLT+ Sbjct: 91 GPVSKTLTV 99>XP_006710605 Length = 353 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G VSKTLT+ Sbjct: 91 GPVSKTLTV 99>NP_689804 Length = 563 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G+VSKTL L Sbjct: 401 GEVSKTLDL 409>NP_001273173 Length = 484 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G+VSKTL L Sbjct: 322 GEVSKTLDL 330>NP_001273172 Length = 523 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G+VSKTL L Sbjct: 361 GEVSKTLDL 369>XP_006719326 Length = 539 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G+VSKTL L Sbjct: 401 GEVSKTLDL 409>XP_006719325 Length = 563 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G+VSKTL L Sbjct: 401 GEVSKTLDL 409>NP_000292 Length = 810 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 GKVSKTLT 8 GK+SKT++ Sbjct: 195 GKISKTMS 202>NP_068380 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>NP_001119593 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>NP_001119594 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>NP_005325 Length = 2035 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G V+KT+TL Sbjct: 655 GGVTKTITL 663>XP_005274721 Length = 2036 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G V+KT+TL Sbjct: 655 GGVTKTITL 663>XP_006724879 Length = 2079 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G V+KT+TL Sbjct: 655 GGVTKTITL 663>XP_006724878 Length = 2080 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 G V+KT+TL Sbjct: 655 GGVTKTITL 663>XP_005257619 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>XP_006722070 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>XP_005257617 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>XP_005257618 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>XP_005257616 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 GKVSKTLT 8 G +SKTLT Sbjct: 227 GVISKTLT 234>NP_060695 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 GK+ +TLT+ Sbjct: 474 GKLERTLTV 482>XP_005251560 Length = 462 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 GKVSKTLTL 9 GK+ +TLT+ Sbjct: 423 GKLERTLTV 431>NP_919047 Length = 520 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GKVSKTLTL 9 GKVS+T L Sbjct: 363 GKVSRTCKL 371>NP_001269796 Length = 251 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 97 GKISKT 102>NP_001269800 Length = 493 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_001269801 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_001269799 Length = 463 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_001121163 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_057208 Length = 417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_001269797 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_001269798 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 263 GKISKT 268>NP_000252 Length = 504 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VSKTLTL 9 +SKTLT+ Sbjct: 459 ISKTLTI 465>NP_002514 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GKVSKTL 7 GK+ KTL Sbjct: 238 GKIKKTL 244>XP_005250598 Length = 457 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GKVSKTLTL 9 GKVS+T L Sbjct: 300 GKVSRTCKL 308>NP_899234 Length = 1134 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 GKVSKT 6 GK+SKT Sbjct: 179 GKISKT 184Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.306 0.124 0.304 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,764 Number of extensions: 404 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |