Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001268421 20 299 NP_000170 20 299 NP_001268422 20 299 NP_001268423 20 299 XP_005264328 20 299 NP_001139447 17 2528 NP_003975 17 2528 NP_001073892 17 2528 XP_006722228 17 2528 NP_002449 16 5631 NP_005594 16 7355 NP_001018066 16 7355 NP_003374 16 7355 NP_000578 16 7355 XP_006722545 16 7355 XP_006722544 16 7355 XP_006716928 16 7355 XP_006716927 16 7355 NP_001007256 16 7355 NP_001185480 15 9605 NP_077742 15 9605 NP_077744 15 9605 NP_001185481 15 9605 NP_000369 15 9605 NP_001177874 15 9605 NP_733828 15 9605 NP_001177876 15 9605 NP_005649 15 9605 NP_001138341 15 9605 NP_055532 15 9605 NP_062547 15 9605 NP_851782 15 9605 NP_006848 15 9605 XP_006723575 15 9605 XP_005259502 15 9605 XP_005262782 15 9605 XP_006714141 15 9605 XP_005262780 15 9605 XP_005262779 15 9605 NP_001397 15 9605>NP_001268421 Length = 1230 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIATFDGTA 9 G ATFDGTA Sbjct: 1088 GTATFDGTA 1096>NP_000170 Length = 1360 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIATFDGTA 9 G ATFDGTA Sbjct: 1218 GTATFDGTA 1226>NP_001268422 Length = 1058 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIATFDGTA 9 G ATFDGTA Sbjct: 916 GTATFDGTA 924>NP_001268423 Length = 1058 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIATFDGTA 9 G ATFDGTA Sbjct: 916 GTATFDGTA 924>XP_005264328 Length = 1261 Score = 20.4 bits (41), Expect = 299 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIATFDGTA 9 G ATFDGTA Sbjct: 1119 GTATFDGTA 1127>NP_001139447 Length = 641 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GIATFDGTA 9 GIAT GTA Sbjct: 282 GIATLTGTA 290>NP_003975 Length = 592 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GIATFDGTA 9 GIAT GTA Sbjct: 233 GIATLTGTA 241>NP_001073892 Length = 1140 Score = 17.3 bits (33), Expect = 2528 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 GIATFDGT 8 GIAT DGT Sbjct: 610 GIATEDGT 617>XP_006722228 Length = 549 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 GIATFDGTA 9 GIAT GTA Sbjct: 189 GIATLTGTA 197>NP_002449 Length = 5762 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATFDGTA 9 +TFDGT+ Sbjct: 5084 STFDGTS 5090>NP_005594 Length = 1251 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 IATFDG 7 +ATFDG Sbjct: 256 LATFDG 261>NP_001018066 Length = 845 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IATFDGT 8 +AT DGT Sbjct: 539 VATLDGT 545>NP_003374 Length = 873 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IATFDGT 8 +AT DGT Sbjct: 539 VATLDGT 545>NP_000578 Length = 843 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 GIATFDGT 8 G+AT +GT Sbjct: 464 GLATVEGT 471>XP_006722545 Length = 982 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 IATFDG 7 +ATFDG Sbjct: 256 LATFDG 261>XP_006722544 Length = 1251 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 IATFDG 7 +ATFDG Sbjct: 256 LATFDG 261>XP_006716928 Length = 850 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IATFDGT 8 +AT DGT Sbjct: 544 VATLDGT 550>XP_006716927 Length = 878 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IATFDGT 8 +AT DGT Sbjct: 544 VATLDGT 550>NP_001007256 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 ATFDGTA 9 ++FDGTA Sbjct: 242 SSFDGTA 248>NP_001185480 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 TFDGT 8 TFDGT Sbjct: 9 TFDGT 13>NP_077742 Length = 514 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 TFDGT 8 TFDGT Sbjct: 221 TFDGT 225>NP_077744 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 TFDGT 8 TFDGT Sbjct: 221 TFDGT 225>NP_001185481 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 TFDGT 8 TFDGT Sbjct: 9 TFDGT 13>NP_000369 Length = 497 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 TFDGT 8 TFDGT Sbjct: 221 TFDGT 225>NP_001177874 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 263 ASFDGT 268>NP_733828 Length = 1322 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 412 ASFDGT 417>NP_001177876 Length = 294 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 141 ASFDGT 146>NP_005649 Length = 416 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 263 ASFDGT 268>NP_001138341 Length = 231 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 GIATFDG 7 G+ATF G Sbjct: 87 GLATFHG 93>NP_055532 Length = 1300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GIATFDGTA 9 G+A F+G A Sbjct: 1275 GLAAFNGLA 1283>NP_062547 Length = 822 Score = 15.4 bits (28), Expect = 9605 Identities = 5/5 (100%), Positives = 5/5 (100%) Query: 4 TFDGT 8 TFDGT Sbjct: 457 TFDGT 461>NP_851782 Length = 1283 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 388 ASFDGT 393>NP_006848 Length = 155 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 GIATFDGT 8 G A+FD T Sbjct: 108 GFASFDST 115>XP_006723575 Length = 1302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GIATFDGTA 9 G+A F+G A Sbjct: 1275 GLAAFNGLA 1283>XP_005259502 Length = 1313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 GIATFDGTA 9 G+A F+G A Sbjct: 1288 GLAAFNGLA 1296>XP_005262782 Length = 1216 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 314 ASFDGT 319>XP_006714141 Length = 1259 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 412 ASFDGT 417>XP_005262780 Length = 1307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 412 ASFDGT 417>XP_005262779 Length = 1314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 ATFDGT 8 A+FDGT Sbjct: 412 ASFDGT 417>NP_001397 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 IATFDGT 8 IAT DGT Sbjct: 138 IATSDGT 144Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 616,395 Number of extensions: 1116 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |