Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 17 2528 NP_066553 17 4312 NP_001001503 17 4312 NP_000375 16 5631 NP_065910 16 5631 XP_005263222 16 5631 XP_005263221 16 5631 XP_005263220 16 5631 XP_006714345 16 5631 XP_005263219 16 5631 NP_001122060 16 7355 NP_056949 16 7355 NP_001139508 16 7355 NP_001139509 16 7355 XP_005258390 16 7355 XP_005258389 16 7355 XP_005258386 16 7355 XP_006722589 16 7355 NP_056081 15 9605 NP_001247420 15 9605 XP_006723821 15 9605 XP_006723820 15 9605 XP_006723819 15 9605>NP_005350 Length = 552 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA AISLS Sbjct: 477 GIAPAISLS 485>NP_066553 Length = 473 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+AS +SLS Sbjct: 27 GLASTVSLS 35>NP_001001503 Length = 108 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+AS +SLS Sbjct: 27 GLASTVSLS 35>NP_000375 Length = 4563 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASAI +S Sbjct: 1874 GLASAIDMS 1882>NP_065910 Length = 1996 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASA SLS Sbjct: 1132 GLASASSLS 1140>XP_005263222 Length = 1820 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASA SLS Sbjct: 956 GLASASSLS 964>XP_005263221 Length = 1820 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASA SLS Sbjct: 956 GLASASSLS 964>XP_005263220 Length = 1820 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASA SLS Sbjct: 956 GLASASSLS 964>XP_006714345 Length = 1961 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASA SLS Sbjct: 1097 GLASASSLS 1105>XP_005263219 Length = 1996 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 G+ASA SLS Sbjct: 1132 GLASASSLS 1140>NP_001122060 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 323 GIAAGLSLS 331>NP_056949 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 267 GIAAGLSLS 275>NP_001139508 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 267 GIAAGLSLS 275>NP_001139509 Length = 445 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 323 GIAAGLSLS 331>XP_005258390 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 135 GIAAGLSLS 143>XP_005258389 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 135 GIAAGLSLS 143>XP_005258386 Length = 402 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 323 GIAAGLSLS 331>XP_006722589 Length = 424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 GIASAISLS 9 GIA+ +SLS Sbjct: 302 GIAAGLSLS 310>NP_056081 Length = 581 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIASAISLS 9 G+A ISLS Sbjct: 311 GLAEGISLS 319>NP_001247420 Length = 597 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIASAISLS 9 G+A ISLS Sbjct: 327 GLAEGISLS 335>XP_006723821 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIASAISLS 9 G+A ISLS Sbjct: 64 GLAEGISLS 72>XP_006723820 Length = 334 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIASAISLS 9 G+A ISLS Sbjct: 64 GLAEGISLS 72>XP_006723819 Length = 614 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 GIASAISLS 9 G+A ISLS Sbjct: 344 GLAEGISLS 352Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.307 0.120 0.273 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 223,063 Number of extensions: 247 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |