Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001895 20 390 NP_001091680 20 390 NP_001091679 20 390 XP_006713048 20 390 XP_006713047 20 390 XP_006713046 20 390 XP_005264943 20 390 NP_004303 16 7355 XP_006724714 16 7355 NP_001018125 15 9605 NP_149075 15 9605 NP_075384 15 9605 XP_005276286 15 9605 XP_005277590 15 9605 XP_005265698 15 9605 XP_005265004 15 9605 XP_006713088 15 9605 XP_006713087 15 9605 XP_005265003 15 9605 XP_006713086 15 9605 XP_006713085 15 9605 XP_006713084 15 9605 XP_005276004 15 9605 NP_037377 15 9605>NP_001895 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 70 FSQSFTQEQ 78>NP_001091680 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 70 FSQSFTQEQ 78>NP_001091679 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 70 FSQSFTQEQ 78>XP_006713048 Length = 720 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 70 FSQSFTQEQ 78>XP_006713047 Length = 774 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 63 FSQSFTQEQ 71>XP_006713046 Length = 774 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 63 FSQSFTQEQ 71>XP_005264943 Length = 781 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FSQSFAQEQ 9 FSQSF QEQ Sbjct: 70 FSQSFTQEQ 78>NP_004303 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 FSQSFA 6 FSQSFA Sbjct: 265 FSQSFA 270>XP_006724714 Length = 343 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 FSQSFA 6 FSQSFA Sbjct: 220 FSQSFA 225>NP_001018125 Length = 1451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>NP_149075 Length = 1471 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>NP_075384 Length = 709 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQSFAQEQ 9 SQS+ +EQ Sbjct: 156 SQSYVEEQ 163>XP_005276286 Length = 642 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 251 FSQDFAKD 258>XP_005277590 Length = 900 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 451 FSQDFAKD 458>XP_005265698 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 235 FSQDFAKD 242>XP_005265004 Length = 806 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 39 FSQDFAKD 46>XP_006713088 Length = 1382 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 615 FSQDFAKD 622>XP_006713087 Length = 1432 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>XP_005265003 Length = 1451 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>XP_006713086 Length = 1458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>XP_006713085 Length = 1471 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>XP_006713084 Length = 1471 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 704 FSQDFAKD 711>XP_005276004 Length = 584 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FSQSFAQE 8 FSQ FA++ Sbjct: 242 FSQDFAKD 249>NP_037377 Length = 437 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 FSQSFAQE 8 FS+ F QE Sbjct: 429 FSEDFGQE 436Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.115 0.285 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 444,821 Number of extensions: 785 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |