Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005350 20 509 NP_001269618 18 1935 NP_076982 18 1935 NP_001269619 18 1935 NP_001269617 18 1935 XP_005252259 18 1935 XP_006717345 18 1935 XP_005252255 18 1935 XP_005252253 18 1935 XP_005252252 18 1935 NP_001035194 17 3301 NP_004742 17 4312 NP_065681 16 7355 NP_066124 16 7355 NP_001955 16 7355 NP_056164 16 7355 NP_037373 16 7355 NP_689824 16 7355 XP_005255967 16 7355 XP_005255966 16 7355 XP_006717999 16 7355 XP_005249030 16 7355 XP_005249029 16 7355 NP_001231639 15 9605 NP_002047 15 9605 NP_077270 15 9605 NP_001158238 15 9605 NP_073595 15 9605 NP_006181 15 9605 NP_005101 15 9605 NP_008816 15 9605 NP_001258547 15 9605 NP_060077 15 9605 NP_001273465 15 9605 XP_005259070 15 9605 XP_005256014 15 9605 XP_005249355 15 9605 XP_006715005 15 9605 XP_006712618 15 9605>NP_005350 Length = 552 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FPNISVAST 9 FPNI VAST Sbjct: 214 FPNIPVAST 222>NP_001269618 Length = 781 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 336 FPNLAVAS 343>NP_076982 Length = 854 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 409 FPNLAVAS 416>NP_001269619 Length = 786 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 341 FPNLAVAS 348>NP_001269617 Length = 853 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 408 FPNLAVAS 415>XP_005252259 Length = 555 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 110 FPNLAVAS 117>XP_006717345 Length = 781 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 336 FPNLAVAS 343>XP_005252255 Length = 786 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 341 FPNLAVAS 348>XP_005252253 Length = 815 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 370 FPNLAVAS 377>XP_005252252 Length = 816 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 FPNISVAS 8 FPN++VAS Sbjct: 371 FPNLAVAS 378>NP_001035194 Length = 4493 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP S+AST Sbjct: 3889 FPGASIAST 3897>NP_004742 Length = 438 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 FPNISVAS 8 FPN+ +AS Sbjct: 183 FPNVFIAS 190>NP_065681 Length = 1072 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 PNISVA 7 PNISVA Sbjct: 198 PNISVA 203>NP_066124 Length = 1114 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 PNISVA 7 PNISVA Sbjct: 198 PNISVA 203>NP_001955 Length = 543 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FPNISVAST 9 FP+ SVA+T Sbjct: 490 FPSPSVATT 498>NP_056164 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP +S AST Sbjct: 540 FPAVSSAST 548>NP_037373 Length = 1164 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 FPNISVA 7 FP ISVA Sbjct: 421 FPTISVA 427>NP_689824 Length = 740 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PNISVAST 9 P+IS AST Sbjct: 469 PDISAAST 476>XP_005255967 Length = 1154 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 FPNISVA 7 FP ISVA Sbjct: 421 FPTISVA 427>XP_005255966 Length = 1190 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 FPNISVA 7 FP ISVA Sbjct: 421 FPTISVA 427>XP_006717999 Length = 1207 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 PNISVA 7 PNISVA Sbjct: 291 PNISVA 296>XP_005249030 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP +S AST Sbjct: 540 FPAVSSAST 548>XP_005249029 Length = 1079 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP +S AST Sbjct: 540 FPAVSSAST 548>NP_001231639 Length = 699 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 P I VAST Sbjct: 486 PEIGVAST 493>NP_002047 Length = 681 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 P I VAST Sbjct: 468 PEIGVAST 475>NP_077270 Length = 298 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PNISVAS 8 PNISV S Sbjct: 68 PNISVPS 74>NP_001158238 Length = 2789 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP+ S AST Sbjct: 2664 FPDPSTAST 2672>NP_073595 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PNISVAS 8 PNISV S Sbjct: 68 PNISVPS 74>NP_006181 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 FPNISVAS 8 FP ISV S Sbjct: 343 FPGISVKS 350>NP_005101 Length = 682 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 P I VAST Sbjct: 469 PEIGVAST 476>NP_008816 Length = 3703 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP+ S AST Sbjct: 3578 FPDPSTAST 3586>NP_001258547 Length = 780 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 PN+ AST Sbjct: 512 PNVPTAST 519>NP_060077 Length = 782 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 PN+ AST Sbjct: 513 PNVPTAST 520>NP_001273465 Length = 341 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PNISVAS 8 PNISV S Sbjct: 318 PNISVLS 324>XP_005259070 Length = 781 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 PN+ AST Sbjct: 513 PNVPTAST 520>XP_005256014 Length = 3702 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 FPNISVAST 9 FP+ S AST Sbjct: 3577 FPDPSTAST 3585>XP_005249355 Length = 289 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 PNISVAS 8 PNISV S Sbjct: 68 PNISVPS 74>XP_006715005 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PNISVAST 9 P I VAST Sbjct: 469 PEIGVAST 476>XP_006712618 Length = 577 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 FPNISVAS 8 FP ISV S Sbjct: 343 FPGISVKS 350Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.122 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 418,966 Number of extensions: 604 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |