Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004963 19 665 XP_005251512 19 665 NP_057431 17 4312 NP_065908 16 5631 NP_060502 16 7355 NP_958815 16 7355 NP_689596 16 7355 NP_001231514 16 7355 NP_079019 16 7355 NP_001231513 16 7355 NP_001193856 16 7355 NP_001257572 16 7355 NP_057103 16 7355 XP_006720967 16 7355 XP_005255484 16 7355 XP_006720966 16 7355 XP_005255483 16 7355 XP_006715067 16 7355 NP_002326 15 9605 NP_001017975 15 9605 NP_057346 15 9605 NP_008849 15 9605 XP_005274051 15 9605 XP_006710458 15 9605 NP_001020127 15 9605>NP_004963 Length = 1132 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FMDLALRVD 9 F DLALRVD Sbjct: 1116 FRDLALRVD 1124>XP_005251512 Length = 1132 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 FMDLALRVD 9 F DLALRVD Sbjct: 1116 FRDLALRVD 1124>NP_057431 Length = 227 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 FMDLALRVD 9 ++D+ALR D Sbjct: 85 YVDIALRTD 93>NP_065908 Length = 973 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 MDLALRVD 9 +DLAL+VD Sbjct: 727 VDLALQVD 734>NP_060502 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 64 DLALRAD 70>NP_958815 Length = 371 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 64 DLALRAD 70>NP_689596 Length = 885 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 FMDLALRVD 9 F+D ALR+D Sbjct: 544 FVDGALRLD 552>NP_001231514 Length = 389 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 61 DLALRAD 67>NP_079019 Length = 527 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 FMDLALRV 8 F+DLAL V Sbjct: 90 FVDLALNV 97>NP_001231513 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 130 DLALRAD 136>NP_001193856 Length = 4707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FMDLALRVD 9 F+DL R+D Sbjct: 1549 FLDLKKRID 1557>NP_001257572 Length = 391 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 63 DLALRAD 69>NP_057103 Length = 392 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 64 DLALRAD 70>XP_006720967 Length = 272 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 11 DLALRAD 17>XP_005255484 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 11 DLALRAD 17>XP_006720966 Length = 318 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 11 DLALRAD 17>XP_005255483 Length = 325 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 DLALRVD 9 DLALR D Sbjct: 64 DLALRAD 70>XP_006715067 Length = 4707 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FMDLALRVD 9 F+DL R+D Sbjct: 1549 FLDLKKRID 1557>NP_002326 Length = 1615 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FMDLALRVD 9 F D+ L+VD Sbjct: 362 FTDIVLQVD 370>NP_001017975 Length = 1435 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FMDLALRVD 9 F+D+ LR++ Sbjct: 819 FLDIQLRIN 827>NP_057346 Length = 475 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 FMDLALR 7 F DLALR Sbjct: 20 FWDLALR 26>NP_008849 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 MDLALRV 8 MDL LRV Sbjct: 1 MDLVLRV 7>XP_005274051 Length = 1653 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 FMDLALRVD 9 F D+ L+VD Sbjct: 362 FTDIVLQVD 370>XP_006710458 Length = 846 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 FMDLALRVD 9 F+D+ LR++ Sbjct: 230 FLDIQLRIN 238>NP_001020127 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 MDLALRV 8 MDL LRV Sbjct: 1 MDLVLRV 7Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.345 0.155 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 356,364 Number of extensions: 539 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |