Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 18 1135 NP_005913 18 1135 XP_005267046 18 1135 XP_005267045 18 1135 NP_065955 16 7355 NP_001154826 16 7355 NP_055864 16 7355 XP_006723364 16 7355 XP_005259166 16 7355 XP_005259165 16 7355 XP_005259164 16 7355 XP_006714495 16 7355 NP_055928 15 9605 NP_056366 15 9605 NP_001273760 15 9605 NP_001273759 15 9605 NP_001259 15 9605 XP_005256618 15 9605 XP_005256617 15 9605 XP_005266301 15 9605 XP_005266299 15 9605 XP_006719822 15 9605 XP_006719821 15 9605 XP_005265092 15 9605 XP_005265091 15 9605>NP_006715 Length = 1558 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DRLVSIAAE 9 DRL SIAAE Sbjct: 1183 DRLASIAAE 1191>NP_005913 Length = 1608 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DRLVSIAAE 9 DRL SIAAE Sbjct: 1233 DRLASIAAE 1241>XP_005267046 Length = 1554 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DRLVSIAAE 9 DRL SIAAE Sbjct: 1179 DRLASIAAE 1187>XP_005267045 Length = 1604 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DRLVSIAAE 9 DRL SIAAE Sbjct: 1229 DRLASIAAE 1237>NP_065955 Length = 779 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DRLVS+ A Sbjct: 428 DRLVSVRA 435>NP_001154826 Length = 583 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DRLVS+ A Sbjct: 403 DRLVSVRA 410>NP_055864 Length = 914 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 RLVSIAAE 9 R+VSIA+E Sbjct: 176 RIVSIASE 183>XP_006723364 Length = 637 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DRLVS+ A Sbjct: 403 DRLVSVRA 410>XP_005259166 Length = 595 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DRLVS+ A Sbjct: 428 DRLVSVRA 435>XP_005259165 Length = 662 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DRLVS+ A Sbjct: 428 DRLVSVRA 435>XP_005259164 Length = 754 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DRLVS+ A Sbjct: 403 DRLVSVRA 410>XP_006714495 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RLVSIAAE 9 RL+S+AA+ Sbjct: 97 RLISVAAQ 104>NP_055928 Length = 2961 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 D LVS+AA Sbjct: 934 DTLVSVAA 941>NP_056366 Length = 629 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 DRLVSIA 7 DRLVSI+ Sbjct: 248 DRLVSIS 254>NP_001273760 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 284 DRIIEIAA 291>NP_001273759 Length = 556 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 313 DRIIEIAA 320>NP_001259 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 308 DRIIEIAA 315>XP_005256618 Length = 2962 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 D LVS+AA Sbjct: 935 DTLVSVAA 942>XP_005256617 Length = 2966 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 D LVS+AA Sbjct: 935 DTLVSVAA 942>XP_005266301 Length = 527 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 284 DRIIEIAA 291>XP_005266299 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 308 DRIIEIAA 315>XP_006719822 Length = 551 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 308 DRIIEIAA 315>XP_006719821 Length = 561 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DRLVSIAA 8 DR++ IAA Sbjct: 318 DRIIEIAA 325>XP_005265092 Length = 451 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 DRLVSIA 7 DRLVSI+ Sbjct: 70 DRLVSIS 76>XP_005265091 Length = 566 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 DRLVSIA 7 DRLVSI+ Sbjct: 185 DRLVSIS 191Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.129 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 238,595 Number of extensions: 308 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |