Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 19 869 NP_001239155 17 4312 NP_006613 17 4312 NP_001099001 17 4312 NP_065870 17 4312 NP_001156001 17 4312 XP_005248807 17 4312 XP_005248805 17 4312 XP_005248804 17 4312 XP_005248803 17 4312 XP_005248802 17 4312 XP_005248801 17 4312 XP_005248800 17 4312 NP_001129225 16 5631 NP_001129224 16 5631 NP_009196 16 5631>NP_115927 Length = 1321 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DMKKSSVTA 9 DMKKS VTA Sbjct: 843 DMKKSPVTA 851>NP_001239155 Length = 671 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DMKKSSVT 8 D+KK+S+T Sbjct: 387 DLKKTSIT 394>NP_006613 Length = 685 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 DMKKSSVT 8 D+KK+S+T Sbjct: 401 DLKKTSIT 408>NP_001099001 Length = 1319 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 688 DTKKSSIT 695>NP_065870 Length = 1302 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 671 DTKKSSIT 678>NP_001156001 Length = 1515 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 884 DTKKSSIT 891>XP_005248807 Length = 1182 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 551 DTKKSSIT 558>XP_005248805 Length = 1345 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 714 DTKKSSIT 721>XP_005248804 Length = 1378 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 747 DTKKSSIT 754>XP_005248803 Length = 1455 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 824 DTKKSSIT 831>XP_005248802 Length = 1515 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 884 DTKKSSIT 891>XP_005248801 Length = 1541 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 910 DTKKSSIT 917>XP_005248800 Length = 1541 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 DMKKSSVT 8 D KKSS+T Sbjct: 910 DTKKSSIT 917>NP_001129225 Length = 601 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DMKKSSVTA 9 D KKS VTA Sbjct: 278 DCKKSLVTA 286>NP_001129224 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DMKKSSVTA 9 D KKS VTA Sbjct: 321 DCKKSLVTA 329>NP_009196 Length = 644 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 DMKKSSVTA 9 D KKS VTA Sbjct: 321 DCKKSLVTA 329Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.101 0.227 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 314,064 Number of extensions: 199 Number of successful extensions: 16 Number of sequences better than 10000.0: 16 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 16 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |