Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_444256 18 1935 NP_444254 18 1935 NP_444253 18 1935 NP_444255 18 1935 XP_005247551 18 1935 XP_005247550 18 1935 XP_006713712 18 1935 XP_005247549 18 1935 NP_065816 17 4312 NP_114119 17 4312 XP_006713840 17 4312 XP_006713839 17 4312 XP_006710573 17 4312 XP_006710572 17 4312 XP_006710571 17 4312 XP_006710570 17 4312 XP_006710569 17 4312 XP_006710568 17 4312 XP_006710567 17 4312 XP_006710566 17 4312 XP_005245859 17 4312 NP_001153514 16 7355 NP_060604 16 7355 NP_004844 16 7355 NP_079490 15 9605 NP_001137301 15 9605 NP_001248359 15 9605 NP_001136126 15 9605 NP_001136125 15 9605 NP_001129514 15 9605 NP_079543 15 9605 NP_001103444 15 9605 NP_001159681 15 9605 NP_001159680 15 9605 NP_009217 15 9605 XP_006722615 15 9605 XP_005268428 15 9605 XP_005268427 15 9605 XP_005268426 15 9605 XP_006714818 15 9605 XP_005264132 15 9605 NP_056988 15 9605>NP_444256 Length = 1794 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 830 DLLGKKVST 838>NP_444254 Length = 1845 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 830 DLLGKKVST 838>NP_444253 Length = 1914 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 899 DLLGKKVST 907>NP_444255 Length = 1863 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 899 DLLGKKVST 907>XP_005247551 Length = 1855 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 840 DLLGKKVST 848>XP_005247550 Length = 1856 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 909 DLLGKKVST 917>XP_006713712 Length = 1923 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 909 DLLGKKVST 917>XP_005247549 Length = 1924 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL KKVST Sbjct: 909 DLLGKKVST 917>NP_065816 Length = 5183 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3945 DLIIGKVST 3953>NP_114119 Length = 886 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVKKVST 9 LL+KKV+T Sbjct: 604 LLIKKVAT 611>XP_006713840 Length = 817 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVKKVST 9 LL+KKV+T Sbjct: 604 LLIKKVAT 611>XP_006713839 Length = 874 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLVKKVST 9 LL+KKV+T Sbjct: 604 LLIKKVAT 611>XP_006710573 Length = 5177 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3939 DLIIGKVST 3947>XP_006710572 Length = 5188 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3950 DLIIGKVST 3958>XP_006710571 Length = 5194 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3956 DLIIGKVST 3964>XP_006710570 Length = 5195 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3957 DLIIGKVST 3965>XP_006710569 Length = 5212 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3974 DLIIGKVST 3982>XP_006710568 Length = 5221 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3983 DLIIGKVST 3991>XP_006710567 Length = 5222 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3984 DLIIGKVST 3992>XP_006710566 Length = 5222 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3984 DLIIGKVST 3992>XP_005245859 Length = 5223 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DL++ KVST Sbjct: 3985 DLIIGKVST 3993>NP_001153514 Length = 546 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 DLLVKKVS 8 +LLV+KVS Sbjct: 4 ELLVRKVS 11>NP_060604 Length = 466 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 DLLVKKVS 8 +LLV+KVS Sbjct: 4 ELLVRKVS 11>NP_004844 Length = 236 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 DLLVKKVST 9 DLL++ VST Sbjct: 60 DLLLRAVST 68>NP_079490 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLLVKKV 7 DLL+KK+ Sbjct: 89 DLLMKKI 95>NP_001137301 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLLVKKV 7 DLL+KK+ Sbjct: 89 DLLMKKI 95>NP_001248359 Length = 199 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LVKKVST 9 L+KKVST Sbjct: 170 LLKKVST 176>NP_001136126 Length = 161 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LVKKVST 9 L+KKVST Sbjct: 132 LLKKVST 138>NP_001136125 Length = 166 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LVKKVST 9 L+KKVST Sbjct: 137 LLKKVST 143>NP_001129514 Length = 586 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LVKKVST 9 L+KKVST Sbjct: 170 LLKKVST 176>NP_079543 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LVKKVST 9 L+KKVST Sbjct: 109 LLKKVST 115>NP_001103444 Length = 685 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 155 LLIDKVST 162>NP_001159681 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 399 LLIDKVST 406>NP_001159680 Length = 929 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 399 LLIDKVST 406>NP_009217 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_006722615 Length = 335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 DLLVKKV 7 DLL+KK+ Sbjct: 89 DLLMKKI 95>XP_005268428 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_005268427 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_005268426 Length = 903 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 155 LLIDKVST 162>XP_006714818 Length = 1147 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLVKKVST 9 LL+ KVST Sbjct: 399 LLIDKVST 406>XP_005264132 Length = 1219 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DLLVKKVS 8 D+LV K+S Sbjct: 1179 DILVSKIS 1186>NP_056988 Length = 1220 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 DLLVKKVS 8 D+LV K+S Sbjct: 1180 DILVSKIS 1187Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.129 0.306 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 330,074 Number of extensions: 467 Number of successful extensions: 42 Number of sequences better than 10000.0: 42 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 42 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |