Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065681 20 390 NP_066124 20 390 XP_006717999 20 390 NP_006747 17 2528 NP_958845 17 2528 XP_006716530 17 2528 NP_653240 17 3301 NP_001159446 17 3301 NP_001252506 17 4312 NP_001251503 17 4312 XP_005257134 17 4312 XP_005255536 17 4312 XP_005255535 17 4312 XP_005255532 17 4312 NP_775113 15 9605 NP_077320 15 9605 NP_775111 15 9605 NP_775110 15 9605 NP_775112 15 9605 NP_000061 15 9605 NP_112494 15 9605 NP_065729 15 9605 XP_005265394 15 9605>NP_065681 Length = 1072 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CRTMIAAAV 9 CRT+IAAAV Sbjct: 634 CRTVIAAAV 642>NP_066124 Length = 1114 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CRTMIAAAV 9 CRT+IAAAV Sbjct: 634 CRTVIAAAV 642>XP_006717999 Length = 1207 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 CRTMIAAAV 9 CRT+IAAAV Sbjct: 727 CRTVIAAAV 735>NP_006747 Length = 301 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 CR M+AAA+ Sbjct: 144 CREMLAAAL 152>NP_958845 Length = 280 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 CR M+AAA+ Sbjct: 123 CREMLAAAL 131>XP_006716530 Length = 254 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 CR M+AAA+ Sbjct: 97 CREMLAAAL 105>NP_653240 Length = 676 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 C+T +AAA+ Sbjct: 95 CQTKVAAAI 103>NP_001159446 Length = 736 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 C+T +AAA+ Sbjct: 95 CQTKVAAAI 103>NP_001252506 Length = 852 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 CRT++ AA+ Sbjct: 320 CRTVMIAAI 328>NP_001251503 Length = 833 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 CRT++ AA+ Sbjct: 320 CRTVMIAAI 328>XP_005257134 Length = 842 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 CRT++ AA+ Sbjct: 329 CRTVMIAAI 337>XP_005255536 Length = 332 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RTMIAAAV 9 R+MIAAAV Sbjct: 54 RSMIAAAV 61>XP_005255535 Length = 332 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RTMIAAAV 9 R+MIAAAV Sbjct: 54 RSMIAAAV 61>XP_005255532 Length = 403 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 RTMIAAAV 9 R+MIAAAV Sbjct: 125 RSMIAAAV 132>NP_775113 Length = 156 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRTMIA 6 CR+MIA Sbjct: 32 CRSMIA 37>NP_077320 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRTMIA 6 CR+MIA Sbjct: 691 CRSMIA 696>NP_775111 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRTMIA 6 CR+MIA Sbjct: 185 CRSMIA 190>NP_775110 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRTMIA 6 CR+MIA Sbjct: 605 CRSMIA 610>NP_775112 Length = 156 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRTMIA 6 CR+MIA Sbjct: 32 CRSMIA 37>NP_000061 Length = 821 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 CRTMIA 6 CR+MIA Sbjct: 697 CRSMIA 702>NP_112494 Length = 898 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 CRTMIAAAV 9 C+T++ AAV Sbjct: 324 CQTIMIAAV 332>NP_065729 Length = 345 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CRTMIAAAV 9 C M+AAA+ Sbjct: 300 CLMMLAAAI 308>XP_005265394 Length = 269 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 CRTMIAAAV 9 C M+AAA+ Sbjct: 224 CLMMLAAAI 232Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.344 0.128 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,816 Number of extensions: 275 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |