Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001276866 18 1482 NP_004439 18 1482 NP_001276865 18 1482 NP_001005862 18 1482 XP_005257197 18 1482 XP_006721828 18 1482 NP_001768 18 1935 NP_942088 18 1935 XP_005247966 18 1935 XP_005247965 18 1935 NP_940962 17 3301 NP_945351 17 3301 XP_005250386 17 3301 XP_005250384 17 3301 NP_064593 16 5631 NP_690621 16 5631 NP_690620 16 5631 NP_690619 16 5631 NP_002812 16 5631 NP_001257327 16 5631 NP_071800 16 5631 NP_001005174 16 5631 NP_001005289 16 5631 XP_006710019 16 7355 NP_659488 15 9605 NP_004586 15 9605 NP_001245352 15 9605 NP_001005175 15 9605 NP_009145 15 9605 XP_005274640 15 9605 XP_005274639 15 9605 XP_005252970 15 9605 XP_005252969 15 9605 XP_006717015 15 9605 XP_005248564 15 9605 NP_005900 15 9605>NP_001276866 Length = 1055 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AYVMAVVGS 9 AYVMA VGS Sbjct: 771 AYVMAGVGS 779>NP_004439 Length = 1255 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AYVMAVVGS 9 AYVMA VGS Sbjct: 771 AYVMAGVGS 779>NP_001276865 Length = 1240 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AYVMAVVGS 9 AYVMA VGS Sbjct: 756 AYVMAGVGS 764>NP_001005862 Length = 1225 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AYVMAVVGS 9 AYVMA VGS Sbjct: 741 AYVMAGVGS 749>XP_005257197 Length = 1225 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AYVMAVVGS 9 AYVMA VGS Sbjct: 741 AYVMAGVGS 749>XP_006721828 Length = 1336 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AYVMAVVGS 9 AYVMA VGS Sbjct: 852 AYVMAGVGS 860>NP_001768 Length = 323 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AVVG Sbjct: 248 AYILAVVG 255>NP_942088 Length = 305 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AVVG Sbjct: 248 AYILAVVG 255>XP_005247966 Length = 293 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AVVG Sbjct: 248 AYILAVVG 255>XP_005247965 Length = 312 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AVVG Sbjct: 248 AYILAVVG 255>NP_940962 Length = 247 Score = 16.9 bits (32), Expect = 3301 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++A++G Sbjct: 176 AYILAIIG 183>NP_945351 Length = 236 Score = 16.9 bits (32), Expect = 3301 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++A++G Sbjct: 189 AYILAIIG 196>XP_005250386 Length = 232 Score = 16.9 bits (32), Expect = 3301 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++A++G Sbjct: 189 AYILAIIG 196>XP_005250384 Length = 232 Score = 16.9 bits (32), Expect = 3301 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++A++G Sbjct: 189 AYILAIIG 196>NP_064593 Length = 592 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYVMAVVG 8 AY +AV+G Sbjct: 553 AYALAVIG 560>NP_690621 Length = 1014 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AV+G Sbjct: 658 AYIIAVLG 665>NP_690620 Length = 940 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AV+G Sbjct: 584 AYIIAVLG 591>NP_690619 Length = 1030 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AV+G Sbjct: 674 AYIIAVLG 681>NP_002812 Length = 1070 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AV+G Sbjct: 714 AYIIAVLG 721>NP_001257327 Length = 1078 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 AYVMAVVG 8 AY++AV+G Sbjct: 722 AYIIAVLG 729>NP_071800 Length = 555 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 AYVMAVVG 8 AY +AV+G Sbjct: 516 AYALAVIG 523>NP_001005174 Length = 321 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YVMAVVGS 9 Y++AVVG+ Sbjct: 37 YIIAVVGN 44>NP_001005289 Length = 320 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YVMAVVGS 9 Y++AVVG+ Sbjct: 43 YIVAVVGN 50>XP_006710019 Length = 565 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YVMAVVGS 9 Y MAV+GS Sbjct: 219 YQMAVMGS 226>NP_659488 Length = 192 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AYVMAVV 7 AY+MAV+ Sbjct: 164 AYLMAVI 170>NP_004586 Length = 366 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYVMAVVGS 9 AY A++GS Sbjct: 176 AYTRAIMGS 184>NP_001245352 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYVMAVVGS 9 AY A++GS Sbjct: 123 AYTRAIMGS 131>NP_001005175 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YVMAVVGS 9 YV+A+VG+ Sbjct: 37 YVVAMVGN 44>NP_009145 Length = 760 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VMAVVGS 9 VMAV+GS Sbjct: 435 VMAVLGS 441>XP_005274640 Length = 275 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYVMAVVGS 9 AY A++GS Sbjct: 80 AYTRAIMGS 88>XP_005274639 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 AYVMAVVGS 9 AY A++GS Sbjct: 142 AYTRAIMGS 150>XP_005252970 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YVMAVVGS 9 YV+A+VG+ Sbjct: 37 YVVAMVGN 44>XP_005252969 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YVMAVVGS 9 YV+A+VG+ Sbjct: 37 YVVAMVGN 44>XP_006717015 Length = 192 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AYVMAVV 7 AY+MAV+ Sbjct: 164 AYLMAVI 170>XP_005248564 Length = 2342 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YVMAVV 7 YVMAVV Sbjct: 918 YVMAVV 923>NP_005900 Length = 2468 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YVMAVV 7 YVMAVV Sbjct: 1044 YVMAVV 1049Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.324 0.129 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 289,180 Number of extensions: 413 Number of successful extensions: 36 Number of sequences better than 10000.0: 36 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 36 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.1 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |