Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_065136 18 1935 NP_982354 18 1935 XP_005266465 18 1935 XP_005266464 18 1935 XP_005266463 18 1935 NP_006197 17 2528 XP_005265800 17 2528 XP_006714103 17 2528 XP_006714102 17 2528 NP_996879 17 3301 XP_006710494 17 3301 XP_006710492 17 3301 XP_006710491 17 3301 XP_006710490 17 3301 XP_006710489 17 3301 NP_689777 17 4312 NP_060360 17 4312 XP_005250858 17 4312 XP_005250857 17 4312 NP_065813 16 7355 NP_055127 16 7355 NP_660348 16 7355 XP_005262449 16 7355 XP_006724802 16 7355 XP_006724801 16 7355 XP_005262448 16 7355 XP_005262447 16 7355 XP_005269099 16 7355 XP_006718869 16 7355 NP_065979 15 9605 NP_001276065 15 9605 NP_004778 15 9605 NP_001276064 15 9605 NP_065934 15 9605 NP_061897 15 9605 XP_005260080 15 9605 XP_005248271 15 9605 XP_006714049 15 9605 XP_005248268 15 9605 XP_005264436 15 9605 XP_006712098 15 9605 XP_006712097 15 9605 NP_006387 15 9605>NP_065136 Length = 1203 Score = 17.7 bits (34), Expect = 1935 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 +AC+R+DS Sbjct: 13 IACLRLDS 20>NP_982354 Length = 1237 Score = 17.7 bits (34), Expect = 1935 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 +AC+R+DS Sbjct: 13 IACLRLDS 20>XP_005266465 Length = 1019 Score = 17.7 bits (34), Expect = 1935 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 +AC+R+DS Sbjct: 13 IACLRLDS 20>XP_005266464 Length = 1161 Score = 17.7 bits (34), Expect = 1935 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 +AC+R+DS Sbjct: 13 IACLRLDS 20>XP_005266463 Length = 1195 Score = 17.7 bits (34), Expect = 1935 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 +AC+R+DS Sbjct: 13 IACLRLDS 20>NP_006197 Length = 1089 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVACMRVDS 9 AVA MRVDS Sbjct: 976 AVARMRVDS 984>XP_005265800 Length = 1089 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVACMRVDS 9 AVA MRVDS Sbjct: 976 AVARMRVDS 984>XP_006714103 Length = 1111 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVACMRVDS 9 AVA MRVDS Sbjct: 998 AVARMRVDS 1006>XP_006714102 Length = 1114 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 AVACMRVDS 9 AVA MRVDS Sbjct: 1001 AVARMRVDS 1009>NP_996879 Length = 2223 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 V CMRV+S Sbjct: 1488 VKCMRVES 1495>XP_006710494 Length = 1152 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 V CMRV+S Sbjct: 417 VKCMRVES 424>XP_006710492 Length = 1351 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 V CMRV+S Sbjct: 616 VKCMRVES 623>XP_006710491 Length = 1496 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 V CMRV+S Sbjct: 761 VKCMRVES 768>XP_006710490 Length = 2158 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 V CMRV+S Sbjct: 1423 VKCMRVES 1430>XP_006710489 Length = 2185 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 V CMRV+S Sbjct: 1450 VKCMRVES 1457>NP_689777 Length = 3997 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVDS Sbjct: 2438 ACTRVDS 2444>NP_060360 Length = 4022 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVDS Sbjct: 2463 ACTRVDS 2469>XP_005250858 Length = 4022 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVDS Sbjct: 2463 ACTRVDS 2469>XP_005250857 Length = 4022 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVDS Sbjct: 2463 ACTRVDS 2469>NP_065813 Length = 1085 Score = 15.8 bits (29), Expect = 7355 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 ++C+R+D+ Sbjct: 601 ISCIRIDN 608>NP_055127 Length = 327 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CMRVDS 9 CMR DS Sbjct: 297 CMRADS 302>NP_660348 Length = 341 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AVACMRV 7 AVAC+R+ Sbjct: 73 AVACLRL 79>XP_005262449 Length = 226 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AVACMRV 7 AVAC+R+ Sbjct: 73 AVACLRL 79>XP_006724802 Length = 237 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AVACMRV 7 AVAC+R+ Sbjct: 73 AVACLRL 79>XP_006724801 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AVACMRV 7 AVAC+R+ Sbjct: 73 AVACLRL 79>XP_005262448 Length = 256 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AVACMRV 7 AVAC+R+ Sbjct: 73 AVACLRL 79>XP_005262447 Length = 269 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 AVACMRV 7 AVAC+R+ Sbjct: 73 AVACLRL 79>XP_005269099 Length = 1062 Score = 15.8 bits (29), Expect = 7355 Identities = 3/8 (37%), Positives = 8/8 (100%) Query: 2 VACMRVDS 9 ++C+R+D+ Sbjct: 578 ISCIRIDN 585>XP_006718869 Length = 270 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 CMRVDS 9 CMR DS Sbjct: 240 CMRADS 245>NP_065979 Length = 1215 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVD+ Sbjct: 569 ACARVDA 575>NP_001276065 Length = 1521 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 + C+RVD+ Sbjct: 384 INCLRVDA 391>NP_004778 Length = 1529 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 + C+RVD+ Sbjct: 384 INCLRVDA 391>NP_001276064 Length = 1525 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 + C+RVD+ Sbjct: 388 INCLRVDA 395>NP_065934 Length = 1185 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVD+ Sbjct: 542 ACARVDA 548>NP_061897 Length = 2071 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AVACMR 6 AVAC+R Sbjct: 1086 AVACLR 1091>XP_005260080 Length = 1106 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 ACMRVDS 9 AC RVD+ Sbjct: 467 ACARVDT 473>XP_005248271 Length = 1404 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 + C+RVD+ Sbjct: 259 INCLRVDA 266>XP_006714049 Length = 1509 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 + C+RVD+ Sbjct: 388 INCLRVDA 395>XP_005248268 Length = 1533 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 VACMRVDS 9 + C+RVD+ Sbjct: 388 INCLRVDA 395>XP_005264436 Length = 1881 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AVACMR 6 AVAC+R Sbjct: 1086 AVACLR 1091>XP_006712098 Length = 2059 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AVACMR 6 AVAC+R Sbjct: 1074 AVACLR 1079>XP_006712097 Length = 2070 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 AVACMR 6 AVAC+R Sbjct: 1086 AVACLR 1091>NP_006387 Length = 199 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 VACMRVDS 9 VAC +DS Sbjct: 71 VACQELDS 78Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.334 0.126 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 527,171 Number of extensions: 515 Number of successful extensions: 43 Number of sequences better than 10000.0: 43 Number of HSP's gapped: 43 Number of HSP's successfully gapped: 43 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |