Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006333 18 1935 XP_005247987 18 1935 XP_006713918 18 1935 XP_005247986 18 1935 NP_068752 17 4312 XP_005263544 17 4312 NP_068765 16 5631 NP_003289 16 5631 XP_005262513 16 5631 XP_006724842 16 5631 XP_006724841 16 5631 XP_006724840 16 5631 XP_005262512 16 5631 XP_005262511 16 5631 XP_006724839 16 5631 XP_005262510 16 5631 XP_005262509 16 5631 XP_006713383 16 5631 XP_005265485 16 5631 NP_001243369 16 7355 NP_003194 16 7355 NP_001188263 16 7355 NP_112181 16 7355 XP_005258578 16 7355 XP_005258577 16 7355 XP_005264578 16 7355 XP_005264577 16 7355 NP_997239 15 9605 NP_001274691 15 9605 NP_001274690 15 9605 NP_004204 15 9605 NP_076996 15 9605 XP_005255050 15 9605 XP_005255048 15 9605 XP_005255046 15 9605 XP_006714561 15 9605 NP_004203 15 9605>NP_006333 Length = 838 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASTSLVTAC 9 ASTSL T+C Sbjct: 494 ASTSLPTSC 502>XP_005247987 Length = 482 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASTSLVTAC 9 ASTSL T+C Sbjct: 134 ASTSLPTSC 142>XP_006713918 Length = 830 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASTSLVTAC 9 ASTSL T+C Sbjct: 482 ASTSLPTSC 490>XP_005247986 Length = 842 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ASTSLVTAC 9 ASTSL T+C Sbjct: 494 ASTSLPTSC 502>NP_068752 Length = 388 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASTSLVTAC 9 +STSL T+C Sbjct: 58 SSTSLSTSC 66>XP_005263544 Length = 366 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 ASTSLVTAC 9 +STSL T+C Sbjct: 58 SSTSLSTSC 66>NP_068765 Length = 1711 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>NP_003289 Length = 615 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSLV AC Sbjct: 434 NTSLVRAC 441>XP_005262513 Length = 1655 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_006724842 Length = 1687 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 451 ADTSLVTA 458>XP_006724841 Length = 1687 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 451 ADTSLVTA 458>XP_006724840 Length = 1785 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_005262512 Length = 1785 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_005262511 Length = 1785 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_006724839 Length = 1785 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_005262510 Length = 1785 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_005262509 Length = 1785 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ASTSLVTA 8 A TSLVTA Sbjct: 549 ADTSLVTA 556>XP_006713383 Length = 615 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSLV AC Sbjct: 434 NTSLVRAC 441>XP_005265485 Length = 596 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSLV AC Sbjct: 415 NTSLVRAC 422>NP_001243369 Length = 422 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASTSLVTAC 9 A+ SLV AC Sbjct: 4 AALSLVAAC 12>NP_003194 Length = 781 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSL+T C Sbjct: 578 TTSLITHC 585>NP_001188263 Length = 612 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSL+T C Sbjct: 409 TTSLITHC 416>NP_112181 Length = 615 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 TSLVTAC 9 TS+ TAC Sbjct: 441 TSITTAC 447>XP_005258578 Length = 403 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASTSLVTAC 9 A+ SLV AC Sbjct: 4 AALSLVAAC 12>XP_005258577 Length = 421 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ASTSLVTAC 9 A+ SLV AC Sbjct: 4 AALSLVAAC 12>XP_005264578 Length = 710 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSL+T C Sbjct: 586 TTSLITHC 593>XP_005264577 Length = 789 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 STSLVTAC 9 +TSL+T C Sbjct: 586 TTSLITHC 593>NP_997239 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 STSLVTAC 9 STS TAC Sbjct: 35 STSAKTAC 42>NP_001274691 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ASTSLVTAC 9 A SLV AC Sbjct: 577 ACVSLVNAC 585>NP_001274690 Length = 483 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ASTSLVTAC 9 A SLV AC Sbjct: 411 ACVSLVNAC 419>NP_004204 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ASTSLVTAC 9 A SLV AC Sbjct: 577 ACVSLVNAC 585>NP_076996 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ASTSLVTA 8 ++TSLVTA Sbjct: 174 SNTSLVTA 181>XP_005255050 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ASTSLVTAC 9 A SLV AC Sbjct: 551 ACVSLVNAC 559>XP_005255048 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ASTSLVTAC 9 A SLV AC Sbjct: 577 ACVSLVNAC 585>XP_005255046 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 6/9 (66%) Query: 1 ASTSLVTAC 9 A SLV AC Sbjct: 577 ACVSLVNAC 585>XP_006714561 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 ASTSLVTA 8 ++TSLVTA Sbjct: 174 SNTSLVTA 181>NP_004203 Length = 658 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ASTSLVTAC 9 A SL++AC Sbjct: 572 ACVSLISAC 580Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.107 0.295 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 274,302 Number of extensions: 360 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |